Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15520

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15510 and ABZR87_RS15515 overlap by 4 nucleotidesABZR87_RS15515 and ABZR87_RS15520 are separated by 64 nucleotidesABZR87_RS15520 and ABZR87_RS15525 are separated by 78 nucleotidesABZR87_RS15525 and ABZR87_RS15530 are separated by 106 nucleotides ABZR87_RS15510: ABZR87_RS15510 - sulfurtransferase, at 3,267,525 to 3,268,373 _RS15510 ABZR87_RS15515: ABZR87_RS15515 - hypothetical protein, at 3,268,370 to 3,268,495 _RS15515 ABZR87_RS15520: ABZR87_RS15520 - flavodoxin family protein, at 3,268,560 to 3,269,132 _RS15520 ABZR87_RS15525: ABZR87_RS15525 - pirin family protein, at 3,269,211 to 3,269,909 _RS15525 ABZR87_RS15530: ABZR87_RS15530 - LysR substrate-binding domain-containing protein, at 3,270,016 to 3,270,918 _RS15530 Position (kb) 3268 3269 3270Strain fitness (log2 ratio) -2 -1 0 1 2at 3267.945 kb on + strand, within ABZR87_RS15510at 3267.945 kb on + strand, within ABZR87_RS15510at 3267.945 kb on + strand, within ABZR87_RS15510at 3267.946 kb on - strand, within ABZR87_RS15510at 3267.946 kb on - strand, within ABZR87_RS15510at 3267.946 kb on - strand, within ABZR87_RS15510at 3267.984 kb on + strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3267.985 kb on - strand, within ABZR87_RS15510at 3268.135 kb on - strand, within ABZR87_RS15510at 3268.135 kb on - strand, within ABZR87_RS15510at 3268.161 kb on + strand, within ABZR87_RS15510at 3268.162 kb on - strand, within ABZR87_RS15510at 3268.188 kb on + strand, within ABZR87_RS15510at 3268.188 kb on + strand, within ABZR87_RS15510at 3268.188 kb on + strand, within ABZR87_RS15510at 3268.189 kb on - strand, within ABZR87_RS15510at 3268.189 kb on - strand, within ABZR87_RS15510at 3268.189 kb on - strand, within ABZR87_RS15510at 3268.314 kb on + strandat 3268.314 kb on + strandat 3268.314 kb on + strandat 3268.314 kb on + strandat 3268.314 kb on + strandat 3268.315 kb on - strandat 3268.315 kb on - strandat 3268.315 kb on - strandat 3268.315 kb on - strandat 3268.315 kb on - strandat 3268.561 kb on + strandat 3268.601 kb on + strandat 3268.601 kb on + strandat 3268.601 kb on + strandat 3268.602 kb on - strandat 3268.602 kb on - strandat 3268.602 kb on - strandat 3268.602 kb on - strandat 3268.704 kb on + strand, within ABZR87_RS15520at 3268.704 kb on + strand, within ABZR87_RS15520at 3268.705 kb on - strand, within ABZR87_RS15520at 3268.705 kb on - strand, within ABZR87_RS15520at 3268.705 kb on - strand, within ABZR87_RS15520at 3268.705 kb on - strand, within ABZR87_RS15520at 3268.708 kb on + strand, within ABZR87_RS15520at 3268.708 kb on + strand, within ABZR87_RS15520at 3268.708 kb on + strand, within ABZR87_RS15520at 3268.709 kb on - strand, within ABZR87_RS15520at 3268.709 kb on - strand, within ABZR87_RS15520at 3268.709 kb on - strand, within ABZR87_RS15520at 3268.709 kb on - strand, within ABZR87_RS15520at 3268.804 kb on + strand, within ABZR87_RS15520at 3268.805 kb on - strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.819 kb on + strand, within ABZR87_RS15520at 3268.820 kb on - strand, within ABZR87_RS15520at 3268.820 kb on - strand, within ABZR87_RS15520at 3268.820 kb on - strand, within ABZR87_RS15520at 3268.820 kb on - strand, within ABZR87_RS15520at 3268.820 kb on - strand, within ABZR87_RS15520at 3268.948 kb on + strand, within ABZR87_RS15520at 3268.948 kb on + strand, within ABZR87_RS15520at 3268.948 kb on + strand, within ABZR87_RS15520at 3268.948 kb on + strand, within ABZR87_RS15520at 3268.949 kb on - strand, within ABZR87_RS15520at 3268.949 kb on - strand, within ABZR87_RS15520at 3268.949 kb on - strand, within ABZR87_RS15520at 3269.067 kb on + strand, within ABZR87_RS15520at 3269.068 kb on - strand, within ABZR87_RS15520at 3269.110 kb on + strandat 3269.110 kb on + strandat 3269.156 kb on + strandat 3269.350 kb on + strand, within ABZR87_RS15525at 3269.350 kb on + strand, within ABZR87_RS15525at 3269.350 kb on + strand, within ABZR87_RS15525at 3269.350 kb on + strand, within ABZR87_RS15525at 3269.350 kb on + strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.351 kb on - strand, within ABZR87_RS15525at 3269.413 kb on + strand, within ABZR87_RS15525at 3269.413 kb on + strand, within ABZR87_RS15525at 3269.710 kb on + strand, within ABZR87_RS15525at 3269.710 kb on + strand, within ABZR87_RS15525at 3269.710 kb on + strand, within ABZR87_RS15525at 3269.710 kb on + strand, within ABZR87_RS15525at 3269.710 kb on + strand, within ABZR87_RS15525at 3269.711 kb on - strand, within ABZR87_RS15525at 3269.711 kb on - strand, within ABZR87_RS15525at 3269.711 kb on - strand, within ABZR87_RS15525at 3269.711 kb on - strand, within ABZR87_RS15525at 3269.723 kb on - strand, within ABZR87_RS15525at 3269.824 kb on + strand, within ABZR87_RS15525at 3269.824 kb on + strand, within ABZR87_RS15525at 3269.824 kb on + strand, within ABZR87_RS15525at 3269.824 kb on + strand, within ABZR87_RS15525at 3269.825 kb on - strand, within ABZR87_RS15525at 3269.825 kb on - strand, within ABZR87_RS15525at 3269.825 kb on - strand, within ABZR87_RS15525at 3269.825 kb on - strand, within ABZR87_RS15525at 3269.848 kb on + strandat 3269.848 kb on + strandat 3269.848 kb on + strandat 3269.849 kb on - strandat 3269.849 kb on - strandat 3269.849 kb on - strandat 3269.849 kb on - strandat 3269.970 kb on + strandat 3269.970 kb on + strandat 3269.971 kb on - strandat 3269.981 kb on + strandat 3269.983 kb on + strandat 3269.984 kb on - strandat 3270.104 kb on + strandat 3270.104 kb on + strandat 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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3,267,945 + ABZR87_RS15510 0.49 +0.1
3,267,945 + ABZR87_RS15510 0.49 +0.2
3,267,945 + ABZR87_RS15510 0.49 -0.2
3,267,946 - ABZR87_RS15510 0.50 -0.1
3,267,946 - ABZR87_RS15510 0.50 +0.2
3,267,946 - ABZR87_RS15510 0.50 +0.1
3,267,984 + ABZR87_RS15510 0.54 -0.1
3,267,985 - ABZR87_RS15510 0.54 +0.7
3,267,985 - ABZR87_RS15510 0.54 -0.4
3,267,985 - ABZR87_RS15510 0.54 -0.7
3,267,985 - ABZR87_RS15510 0.54 +0.3
3,267,985 - ABZR87_RS15510 0.54 +1.0
3,267,985 - ABZR87_RS15510 0.54 +0.1
3,268,135 - ABZR87_RS15510 0.72 +1.4
3,268,135 - ABZR87_RS15510 0.72 +0.8
3,268,161 + ABZR87_RS15510 0.75 +0.4
3,268,162 - ABZR87_RS15510 0.75 +0.0
3,268,188 + ABZR87_RS15510 0.78 -0.3
3,268,188 + ABZR87_RS15510 0.78 -0.6
3,268,188 + ABZR87_RS15510 0.78 -0.2
3,268,189 - ABZR87_RS15510 0.78 +0.4
3,268,189 - ABZR87_RS15510 0.78 +0.3
3,268,189 - ABZR87_RS15510 0.78 -0.2
3,268,314 + +2.2
3,268,314 + -0.9
3,268,314 + +0.2
3,268,314 + -0.6
3,268,314 + -1.0
3,268,315 - -1.2
3,268,315 - +0.3
3,268,315 - +0.4
3,268,315 - +0.6
3,268,315 - +0.8
3,268,561 + +2.1
3,268,601 + -1.5
3,268,601 + +0.9
3,268,601 + -0.4
3,268,602 - -0.3
3,268,602 - +0.0
3,268,602 - -0.8
3,268,602 - +0.8
3,268,704 + ABZR87_RS15520 0.25 -0.6
3,268,704 + ABZR87_RS15520 0.25 -0.5
3,268,705 - ABZR87_RS15520 0.25 -1.1
3,268,705 - ABZR87_RS15520 0.25 -0.1
3,268,705 - ABZR87_RS15520 0.25 -0.3
3,268,705 - ABZR87_RS15520 0.25 -0.8
3,268,708 + ABZR87_RS15520 0.26 -0.9
3,268,708 + ABZR87_RS15520 0.26 -1.2
3,268,708 + ABZR87_RS15520 0.26 +1.4
3,268,709 - ABZR87_RS15520 0.26 +0.3
3,268,709 - ABZR87_RS15520 0.26 -0.1
3,268,709 - ABZR87_RS15520 0.26 -0.5
3,268,709 - ABZR87_RS15520 0.26 -1.2
3,268,804 + ABZR87_RS15520 0.43 -0.6
3,268,805 - ABZR87_RS15520 0.43 -0.4
3,268,819 + ABZR87_RS15520 0.45 -0.4
3,268,819 + ABZR87_RS15520 0.45 +0.5
3,268,819 + ABZR87_RS15520 0.45 -1.1
3,268,819 + ABZR87_RS15520 0.45 -1.8
3,268,819 + ABZR87_RS15520 0.45 +0.0
3,268,819 + ABZR87_RS15520 0.45 +0.5
3,268,820 - ABZR87_RS15520 0.45 +0.1
3,268,820 - ABZR87_RS15520 0.45 +0.0
3,268,820 - ABZR87_RS15520 0.45 +1.0
3,268,820 - ABZR87_RS15520 0.45 +0.6
3,268,820 - ABZR87_RS15520 0.45 -0.5
3,268,948 + ABZR87_RS15520 0.68 +0.5
3,268,948 + ABZR87_RS15520 0.68 +1.0
3,268,948 + ABZR87_RS15520 0.68 +0.1
3,268,948 + ABZR87_RS15520 0.68 +0.4
3,268,949 - ABZR87_RS15520 0.68 -0.2
3,268,949 - ABZR87_RS15520 0.68 -0.8
3,268,949 - ABZR87_RS15520 0.68 +0.3
3,269,067 + ABZR87_RS15520 0.88 -0.2
3,269,068 - ABZR87_RS15520 0.89 -0.8
3,269,110 + +1.3
3,269,110 + -1.4
3,269,156 + -0.8
3,269,350 + ABZR87_RS15525 0.20 -0.3
3,269,350 + ABZR87_RS15525 0.20 +0.4
3,269,350 + ABZR87_RS15525 0.20 -0.8
3,269,350 + ABZR87_RS15525 0.20 +0.1
3,269,350 + ABZR87_RS15525 0.20 +0.5
3,269,351 - ABZR87_RS15525 0.20 -0.5
3,269,351 - ABZR87_RS15525 0.20 -0.3
3,269,351 - ABZR87_RS15525 0.20 -0.1
3,269,351 - ABZR87_RS15525 0.20 -0.2
3,269,351 - ABZR87_RS15525 0.20 +0.0
3,269,351 - ABZR87_RS15525 0.20 +0.1
3,269,413 + ABZR87_RS15525 0.29 +0.5
3,269,413 + ABZR87_RS15525 0.29 -1.8
3,269,710 + ABZR87_RS15525 0.71 +0.9
3,269,710 + ABZR87_RS15525 0.71 -0.3
3,269,710 + ABZR87_RS15525 0.71 +0.1
3,269,710 + ABZR87_RS15525 0.71 +0.1
3,269,710 + ABZR87_RS15525 0.71 +0.2
3,269,711 - ABZR87_RS15525 0.72 +1.3
3,269,711 - ABZR87_RS15525 0.72 -0.9
3,269,711 - ABZR87_RS15525 0.72 -0.6
3,269,711 - ABZR87_RS15525 0.72 +0.0
3,269,723 - ABZR87_RS15525 0.73 -0.1
3,269,824 + ABZR87_RS15525 0.88 -1.5
3,269,824 + ABZR87_RS15525 0.88 +0.6
3,269,824 + ABZR87_RS15525 0.88 -0.8
3,269,824 + ABZR87_RS15525 0.88 +0.4
3,269,825 - ABZR87_RS15525 0.88 -0.3
3,269,825 - ABZR87_RS15525 0.88 +0.4
3,269,825 - ABZR87_RS15525 0.88 -0.6
3,269,825 - ABZR87_RS15525 0.88 +0.4
3,269,848 + -1.6
3,269,848 + -1.2
3,269,848 + +0.4
3,269,849 - -0.2
3,269,849 - +0.7
3,269,849 - -1.1
3,269,849 - -0.6
3,269,970 + +1.9
3,269,970 + -0.5
3,269,971 - +0.1
3,269,981 + -1.1
3,269,983 + +0.1
3,269,984 - +0.5
3,270,104 + +0.3
3,270,104 + -0.4
3,270,121 + ABZR87_RS15530 0.12 +0.1
3,270,121 + ABZR87_RS15530 0.12 +1.4
3,270,121 + ABZR87_RS15530 0.12 +0.1
3,270,121 + ABZR87_RS15530 0.12 +0.4
3,270,121 + ABZR87_RS15530 0.12 -0.5
3,270,121 + ABZR87_RS15530 0.12 +1.6
3,270,121 + ABZR87_RS15530 0.12 +0.6
3,270,121 + ABZR87_RS15530 0.12 +0.3
3,270,121 + ABZR87_RS15530 0.12 +0.1
3,270,122 - ABZR87_RS15530 0.12 +0.9
3,270,122 - ABZR87_RS15530 0.12 +0.6
3,270,122 - ABZR87_RS15530 0.12 +0.1
3,270,122 - ABZR87_RS15530 0.12 +0.9
3,270,122 - ABZR87_RS15530 0.12 +0.2

Or see this region's nucleotide sequence