Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14905 and ABZR87_RS14910 are separated by 102 nucleotides ABZR87_RS14910 and ABZR87_RS14915 are separated by 318 nucleotides ABZR87_RS14915 and ABZR87_RS14920 are separated by 159 nucleotides
ABZR87_RS14905: ABZR87_RS14905 - HAD family hydrolase, at 3,143,431 to 3,144,384
_RS14905
ABZR87_RS14910: ABZR87_RS14910 - polyribonucleotide nucleotidyltransferase, at 3,144,487 to 3,146,661
_RS14910
ABZR87_RS14915: ABZR87_RS14915 - 30S ribosomal protein S15, at 3,146,980 to 3,147,249
_RS14915
ABZR87_RS14920: ABZR87_RS14920 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,147,409 to 3,148,665
_RS14920
Position (kb)
3144
3145
3146
3147 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3143.539 kb on - strand, within ABZR87_RS14905 at 3143.663 kb on + strand, within ABZR87_RS14905 at 3143.663 kb on + strand, within ABZR87_RS14905 at 3143.672 kb on + strand, within ABZR87_RS14905 at 3143.672 kb on + strand, within ABZR87_RS14905 at 3143.672 kb on + strand, within ABZR87_RS14905 at 3143.673 kb on - strand, within ABZR87_RS14905 at 3143.673 kb on - strand, within ABZR87_RS14905 at 3143.673 kb on - strand, within ABZR87_RS14905 at 3143.738 kb on + strand, within ABZR87_RS14905 at 3143.739 kb on - strand, within ABZR87_RS14905 at 3143.739 kb on - strand, within ABZR87_RS14905 at 3143.739 kb on - strand, within ABZR87_RS14905 at 3143.873 kb on + strand, within ABZR87_RS14905 at 3143.874 kb on - strand, within ABZR87_RS14905 at 3143.874 kb on - strand, within ABZR87_RS14905 at 3143.945 kb on - strand, within ABZR87_RS14905 at 3143.945 kb on - strand, within ABZR87_RS14905 at 3143.957 kb on + strand, within ABZR87_RS14905 at 3143.957 kb on + strand, within ABZR87_RS14905 at 3143.957 kb on + strand, within ABZR87_RS14905 at 3143.957 kb on + strand, within ABZR87_RS14905 at 3143.958 kb on - strand, within ABZR87_RS14905 at 3143.958 kb on - strand, within ABZR87_RS14905 at 3143.958 kb on - strand, within ABZR87_RS14905 at 3144.011 kb on + strand, within ABZR87_RS14905 at 3144.011 kb on + strand, within ABZR87_RS14905 at 3144.011 kb on + strand, within ABZR87_RS14905 at 3144.011 kb on + strand, within ABZR87_RS14905 at 3144.012 kb on - strand, within ABZR87_RS14905 at 3144.012 kb on - strand, within ABZR87_RS14905 at 3144.012 kb on - strand, within ABZR87_RS14905 at 3144.012 kb on - strand, within ABZR87_RS14905 at 3144.041 kb on + strand, within ABZR87_RS14905 at 3144.041 kb on + strand, within ABZR87_RS14905 at 3144.041 kb on + strand, within ABZR87_RS14905 at 3144.042 kb on - strand, within ABZR87_RS14905 at 3144.194 kb on + strand, within ABZR87_RS14905 at 3144.314 kb on + strand at 3144.314 kb on + strand at 3144.314 kb on + strand at 3144.489 kb on - strand at 3144.783 kb on - strand, within ABZR87_RS14910 at 3144.783 kb on - strand, within ABZR87_RS14910 at 3144.933 kb on + strand, within ABZR87_RS14910 at 3144.934 kb on - strand, within ABZR87_RS14910 at 3144.934 kb on - strand, within ABZR87_RS14910 at 3144.934 kb on - strand, within ABZR87_RS14910 at 3146.981 kb on + strand at 3146.981 kb on + strand at 3146.982 kb on - strand at 3146.982 kb on - strand at 3146.986 kb on - strand at 3146.986 kb on - strand at 3147.366 kb on + strand at 3147.366 kb on + strand at 3147.366 kb on + strand at 3147.367 kb on - strand at 3147.371 kb on + strand at 3147.371 kb on + strand at 3147.372 kb on - strand at 3147.474 kb on + strand at 3147.475 kb on - strand at 3147.475 kb on - strand at 3147.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 3,143,539 - ABZR87_RS14905 0.11 -0.6 3,143,663 + ABZR87_RS14905 0.24 -0.8 3,143,663 + ABZR87_RS14905 0.24 +0.8 3,143,672 + ABZR87_RS14905 0.25 -0.8 3,143,672 + ABZR87_RS14905 0.25 +0.9 3,143,672 + ABZR87_RS14905 0.25 -2.1 3,143,673 - ABZR87_RS14905 0.25 +1.4 3,143,673 - ABZR87_RS14905 0.25 +0.8 3,143,673 - ABZR87_RS14905 0.25 +0.3 3,143,738 + ABZR87_RS14905 0.32 +0.3 3,143,739 - ABZR87_RS14905 0.32 +0.7 3,143,739 - ABZR87_RS14905 0.32 -0.3 3,143,739 - ABZR87_RS14905 0.32 +0.4 3,143,873 + ABZR87_RS14905 0.46 +2.0 3,143,874 - ABZR87_RS14905 0.46 -1.2 3,143,874 - ABZR87_RS14905 0.46 +0.2 3,143,945 - ABZR87_RS14905 0.54 +0.9 3,143,945 - ABZR87_RS14905 0.54 +0.3 3,143,957 + ABZR87_RS14905 0.55 -0.6 3,143,957 + ABZR87_RS14905 0.55 -0.7 3,143,957 + ABZR87_RS14905 0.55 -0.8 3,143,957 + ABZR87_RS14905 0.55 -1.3 3,143,958 - ABZR87_RS14905 0.55 +0.4 3,143,958 - ABZR87_RS14905 0.55 +1.7 3,143,958 - ABZR87_RS14905 0.55 +2.0 3,144,011 + ABZR87_RS14905 0.61 +0.1 3,144,011 + ABZR87_RS14905 0.61 +0.2 3,144,011 + ABZR87_RS14905 0.61 +0.7 3,144,011 + ABZR87_RS14905 0.61 -0.0 3,144,012 - ABZR87_RS14905 0.61 +0.1 3,144,012 - ABZR87_RS14905 0.61 -0.7 3,144,012 - ABZR87_RS14905 0.61 -0.3 3,144,012 - ABZR87_RS14905 0.61 +0.3 3,144,041 + ABZR87_RS14905 0.64 +1.3 3,144,041 + ABZR87_RS14905 0.64 +0.5 3,144,041 + ABZR87_RS14905 0.64 -0.1 3,144,042 - ABZR87_RS14905 0.64 +1.0 3,144,194 + ABZR87_RS14905 0.80 -1.9 3,144,314 + +0.7 3,144,314 + -0.0 3,144,314 + -0.4 3,144,489 - +0.2 3,144,783 - ABZR87_RS14910 0.14 -0.5 3,144,783 - ABZR87_RS14910 0.14 -2.5 3,144,933 + ABZR87_RS14910 0.21 -1.5 3,144,934 - ABZR87_RS14910 0.21 -0.9 3,144,934 - ABZR87_RS14910 0.21 -2.0 3,144,934 - ABZR87_RS14910 0.21 -0.8 3,146,981 + +0.1 3,146,981 + -1.2 3,146,982 - -0.9 3,146,982 - -0.1 3,146,986 - +0.9 3,146,986 - -1.1 3,147,366 + -0.3 3,147,366 + -0.9 3,147,366 + -1.3 3,147,367 - -0.4 3,147,371 + -0.4 3,147,371 + -1.2 3,147,372 - +0.2 3,147,474 + -0.5 3,147,475 - -0.6 3,147,475 - +1.1 3,147,475 - -1.0
Or see this region's nucleotide sequence