Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12785 and ABZR87_RS12790 are separated by 170 nucleotides ABZR87_RS12790 and ABZR87_RS12795 are separated by 192 nucleotides ABZR87_RS12795 and ABZR87_RS12800 are separated by 41 nucleotides
ABZR87_RS12785: ABZR87_RS12785 - endopeptidase La, at 2,715,331 to 2,717,745
_RS12785
ABZR87_RS12790: ABZR87_RS12790 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 2,717,916 to 2,719,190
_RS12790
ABZR87_RS12795: ABZR87_RS12795 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 2,719,383 to 2,720,030
_RS12795
ABZR87_RS12800: ABZR87_RS12800 - trigger factor, at 2,720,072 to 2,721,415
_RS12800
Position (kb)
2717
2718
2719
2720 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2717.051 kb on + strand, within ABZR87_RS12785 at 2717.052 kb on - strand, within ABZR87_RS12785 at 2717.052 kb on - strand, within ABZR87_RS12785 at 2717.052 kb on - strand, within ABZR87_RS12785 at 2717.054 kb on + strand, within ABZR87_RS12785 at 2717.054 kb on + strand, within ABZR87_RS12785 at 2717.054 kb on + strand, within ABZR87_RS12785 at 2717.055 kb on - strand, within ABZR87_RS12785 at 2717.055 kb on - strand, within ABZR87_RS12785 at 2717.315 kb on + strand, within ABZR87_RS12785 at 2717.316 kb on - strand, within ABZR87_RS12785 at 2717.316 kb on - strand, within ABZR87_RS12785 at 2717.316 kb on - strand, within ABZR87_RS12785 at 2717.518 kb on - strand at 2717.531 kb on + strand at 2717.532 kb on - strand at 2717.532 kb on - strand at 2717.746 kb on + strand at 2717.768 kb on - strand at 2717.768 kb on - strand at 2717.768 kb on - strand at 2717.768 kb on - strand at 2717.775 kb on - strand at 2717.798 kb on - strand at 2717.888 kb on + strand at 2717.889 kb on - strand at 2717.951 kb on - strand at 2717.951 kb on - strand at 2717.984 kb on + strand at 2717.985 kb on - strand at 2717.985 kb on - strand at 2717.985 kb on - strand at 2718.034 kb on + strand at 2718.034 kb on + strand at 2718.034 kb on + strand at 2718.035 kb on - strand at 2718.035 kb on - strand at 2718.035 kb on - strand at 2718.035 kb on - strand at 2718.178 kb on + strand, within ABZR87_RS12790 at 2718.464 kb on + strand, within ABZR87_RS12790 at 2718.465 kb on - strand, within ABZR87_RS12790 at 2718.637 kb on + strand, within ABZR87_RS12790 at 2718.637 kb on + strand, within ABZR87_RS12790 at 2718.637 kb on + strand, within ABZR87_RS12790 at 2718.638 kb on - strand, within ABZR87_RS12790 at 2718.638 kb on - strand, within ABZR87_RS12790 at 2718.671 kb on - strand, within ABZR87_RS12790 at 2718.671 kb on - strand, within ABZR87_RS12790 at 2718.724 kb on + strand, within ABZR87_RS12790 at 2718.725 kb on - strand, within ABZR87_RS12790 at 2718.895 kb on + strand, within ABZR87_RS12790 at 2718.895 kb on + strand, within ABZR87_RS12790 at 2718.895 kb on + strand, within ABZR87_RS12790 at 2718.896 kb on - strand, within ABZR87_RS12790 at 2718.896 kb on - strand, within ABZR87_RS12790 at 2718.904 kb on + strand, within ABZR87_RS12790 at 2718.905 kb on - strand, within ABZR87_RS12790 at 2718.952 kb on + strand, within ABZR87_RS12790 at 2718.952 kb on + strand, within ABZR87_RS12790 at 2718.952 kb on + strand, within ABZR87_RS12790 at 2718.953 kb on - strand, within ABZR87_RS12790 at 2718.953 kb on - strand, within ABZR87_RS12790 at 2718.953 kb on - strand, within ABZR87_RS12790 at 2718.953 kb on - strand, within ABZR87_RS12790 at 2719.071 kb on - strand at 2719.151 kb on - strand at 2719.197 kb on + strand at 2719.198 kb on - strand at 2719.204 kb on - strand at 2719.221 kb on + strand at 2719.222 kb on - strand at 2719.222 kb on - strand at 2719.222 kb on - strand at 2719.222 kb on - strand at 2719.222 kb on - strand at 2719.232 kb on - strand at 2719.260 kb on + strand at 2719.260 kb on + strand at 2719.333 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.354 kb on + strand at 2719.355 kb on - strand at 2719.355 kb on - strand at 2719.355 kb on - strand at 2719.355 kb on - strand at 2719.355 kb on - strand at 2719.371 kb on + strand at 2719.371 kb on + strand at 2719.371 kb on + strand at 2719.372 kb on - strand at 2719.476 kb on - strand, within ABZR87_RS12795 at 2719.531 kb on + strand, within ABZR87_RS12795 at 2719.532 kb on - strand, within ABZR87_RS12795 at 2719.532 kb on - strand, within ABZR87_RS12795 at 2719.732 kb on + strand, within ABZR87_RS12795 at 2719.732 kb on + strand, within ABZR87_RS12795 at 2719.732 kb on + strand, within ABZR87_RS12795 at 2719.733 kb on - strand, within ABZR87_RS12795 at 2719.777 kb on + strand, within ABZR87_RS12795 at 2719.778 kb on - strand, within ABZR87_RS12795 at 2719.778 kb on - strand, within ABZR87_RS12795 at 2719.903 kb on + strand, within ABZR87_RS12795 at 2719.903 kb on + strand, within ABZR87_RS12795 at 2719.904 kb on - strand, within ABZR87_RS12795 at 2719.904 kb on - strand, within ABZR87_RS12795 at 2719.907 kb on + strand, within ABZR87_RS12795 at 2719.907 kb on + strand, within ABZR87_RS12795 at 2719.907 kb on + strand, within ABZR87_RS12795 at 2719.907 kb on + strand, within ABZR87_RS12795 at 2719.908 kb on - strand, within ABZR87_RS12795 at 2719.908 kb on - strand, within ABZR87_RS12795 at 2719.908 kb on - strand, within ABZR87_RS12795 at 2719.908 kb on - strand, within ABZR87_RS12795 at 2720.047 kb on + strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.048 kb on - strand at 2720.175 kb on + strand at 2720.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,717,051 + ABZR87_RS12785 0.71 +1.1 2,717,052 - ABZR87_RS12785 0.71 -0.5 2,717,052 - ABZR87_RS12785 0.71 -2.2 2,717,052 - ABZR87_RS12785 0.71 -2.3 2,717,054 + ABZR87_RS12785 0.71 +0.5 2,717,054 + ABZR87_RS12785 0.71 -1.9 2,717,054 + ABZR87_RS12785 0.71 -1.8 2,717,055 - ABZR87_RS12785 0.71 -0.9 2,717,055 - ABZR87_RS12785 0.71 -1.2 2,717,315 + ABZR87_RS12785 0.82 -1.1 2,717,316 - ABZR87_RS12785 0.82 +0.5 2,717,316 - ABZR87_RS12785 0.82 +0.3 2,717,316 - ABZR87_RS12785 0.82 +0.5 2,717,518 - -0.6 2,717,531 + -0.9 2,717,532 - +0.1 2,717,532 - -1.4 2,717,746 + +1.1 2,717,768 - +0.4 2,717,768 - -1.0 2,717,768 - -0.9 2,717,768 - +0.1 2,717,775 - +1.0 2,717,798 - -0.7 2,717,888 + +1.0 2,717,889 - +0.8 2,717,951 - +1.1 2,717,951 - -0.5 2,717,984 + -0.0 2,717,985 - -1.5 2,717,985 - -0.4 2,717,985 - -0.3 2,718,034 + -0.2 2,718,034 + +1.1 2,718,034 + -0.5 2,718,035 - -0.2 2,718,035 - -0.2 2,718,035 - +0.1 2,718,035 - +0.5 2,718,178 + ABZR87_RS12790 0.21 +1.1 2,718,464 + ABZR87_RS12790 0.43 +0.1 2,718,465 - ABZR87_RS12790 0.43 +2.1 2,718,637 + ABZR87_RS12790 0.57 +2.1 2,718,637 + ABZR87_RS12790 0.57 -0.2 2,718,637 + ABZR87_RS12790 0.57 +1.1 2,718,638 - ABZR87_RS12790 0.57 -0.5 2,718,638 - ABZR87_RS12790 0.57 -1.5 2,718,671 - ABZR87_RS12790 0.59 -1.2 2,718,671 - ABZR87_RS12790 0.59 -3.0 2,718,724 + ABZR87_RS12790 0.63 -0.1 2,718,725 - ABZR87_RS12790 0.63 +0.1 2,718,895 + ABZR87_RS12790 0.77 -2.2 2,718,895 + ABZR87_RS12790 0.77 +0.5 2,718,895 + ABZR87_RS12790 0.77 -1.2 2,718,896 - ABZR87_RS12790 0.77 -0.9 2,718,896 - ABZR87_RS12790 0.77 +2.1 2,718,904 + ABZR87_RS12790 0.77 -0.2 2,718,905 - ABZR87_RS12790 0.78 +0.5 2,718,952 + ABZR87_RS12790 0.81 -0.9 2,718,952 + ABZR87_RS12790 0.81 -0.7 2,718,952 + ABZR87_RS12790 0.81 +0.5 2,718,953 - ABZR87_RS12790 0.81 +0.1 2,718,953 - ABZR87_RS12790 0.81 +0.1 2,718,953 - ABZR87_RS12790 0.81 -1.9 2,718,953 - ABZR87_RS12790 0.81 -1.1 2,719,071 - +0.1 2,719,151 - -1.2 2,719,197 + -1.8 2,719,198 - +0.9 2,719,204 - -0.5 2,719,221 + -0.1 2,719,222 - -0.4 2,719,222 - +0.2 2,719,222 - -1.4 2,719,222 - -0.0 2,719,222 - +0.0 2,719,232 - +0.8 2,719,260 + +0.4 2,719,260 + +0.6 2,719,333 + +2.0 2,719,354 + +0.7 2,719,354 + +0.0 2,719,354 + -0.5 2,719,354 + +0.8 2,719,354 + +1.3 2,719,354 + -0.3 2,719,354 + -0.5 2,719,354 + +0.7 2,719,354 + -0.7 2,719,355 - -1.3 2,719,355 - +1.1 2,719,355 - +0.1 2,719,355 - -1.5 2,719,355 - -0.4 2,719,371 + +0.9 2,719,371 + -0.8 2,719,371 + +0.4 2,719,372 - -0.2 2,719,476 - ABZR87_RS12795 0.14 +0.6 2,719,531 + ABZR87_RS12795 0.23 +1.4 2,719,532 - ABZR87_RS12795 0.23 +0.2 2,719,532 - ABZR87_RS12795 0.23 +1.1 2,719,732 + ABZR87_RS12795 0.54 +1.4 2,719,732 + ABZR87_RS12795 0.54 -2.0 2,719,732 + ABZR87_RS12795 0.54 -0.7 2,719,733 - ABZR87_RS12795 0.54 -0.2 2,719,777 + ABZR87_RS12795 0.61 +0.6 2,719,778 - ABZR87_RS12795 0.61 -0.9 2,719,778 - ABZR87_RS12795 0.61 +0.5 2,719,903 + ABZR87_RS12795 0.80 +0.7 2,719,903 + ABZR87_RS12795 0.80 +0.5 2,719,904 - ABZR87_RS12795 0.80 -0.6 2,719,904 - ABZR87_RS12795 0.80 +0.4 2,719,907 + ABZR87_RS12795 0.81 +2.1 2,719,907 + ABZR87_RS12795 0.81 -2.0 2,719,907 + ABZR87_RS12795 0.81 +1.1 2,719,907 + ABZR87_RS12795 0.81 +0.5 2,719,908 - ABZR87_RS12795 0.81 -1.4 2,719,908 - ABZR87_RS12795 0.81 +0.5 2,719,908 - ABZR87_RS12795 0.81 +0.5 2,719,908 - ABZR87_RS12795 0.81 +0.1 2,720,047 + -2.6 2,720,048 - +0.6 2,720,048 - -1.3 2,720,048 - -0.5 2,720,048 - -0.8 2,720,048 - +1.0 2,720,048 - +1.2 2,720,048 - +0.5 2,720,175 + -1.1 2,720,175 + -1.1
Or see this region's nucleotide sequence