Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11755

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11750 and ABZR87_RS11755 are separated by 37 nucleotidesABZR87_RS11755 and ABZR87_RS11760 are separated by 14 nucleotidesABZR87_RS11760 and ABZR87_RS11765 are separated by 60 nucleotides ABZR87_RS11750: ABZR87_RS11750 - succinyl-diaminopimelate desuccinylase, at 2,490,679 to 2,491,830 _RS11750 ABZR87_RS11755: ABZR87_RS11755 - arsenate reductase, at 2,491,868 to 2,492,212 _RS11755 ABZR87_RS11760: ABZR87_RS11760 - membrane protein, at 2,492,227 to 2,492,640 _RS11760 ABZR87_RS11765: ABZR87_RS11765 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,492,701 to 2,493,528 _RS11765 Position (kb) 2491 2492 2493Strain fitness (log2 ratio) -1 0 1at 2491.870 kb on - strandat 2491.885 kb on - strandat 2492.133 kb on + strand, within ABZR87_RS11755at 2492.134 kb on - strand, within ABZR87_RS11755at 2492.436 kb on + strand, within ABZR87_RS11760at 2492.676 kb on + strandat 2492.676 kb on + strandat 2492.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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2,491,870 - -0.4
2,491,885 - +0.7
2,492,133 + ABZR87_RS11755 0.77 -1.7
2,492,134 - ABZR87_RS11755 0.77 -0.9
2,492,436 + ABZR87_RS11760 0.50 +0.2
2,492,676 + -0.4
2,492,676 + -0.3
2,492,703 - +0.4

Or see this region's nucleotide sequence