Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11675

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11670 and ABZR87_RS11675 are separated by 109 nucleotidesABZR87_RS11675 and ABZR87_RS11680 are separated by 16 nucleotidesABZR87_RS11680 and ABZR87_RS11685 overlap by 18 nucleotides ABZR87_RS11670: ABZR87_RS11670 - DNA repair protein RadA, at 2,473,154 to 2,474,524 _RS11670 ABZR87_RS11675: ABZR87_RS11675 - disulfide bond formation protein B, at 2,474,634 to 2,475,113 _RS11675 ABZR87_RS11680: ABZR87_RS11680 - DUF523 domain-containing protein, at 2,475,130 to 2,475,657 _RS11680 ABZR87_RS11685: ABZR87_RS11685 - CaiB/BaiF CoA-transferase family protein, at 2,475,640 to 2,476,746 _RS11685 Position (kb) 2474 2475 2476Strain fitness (log2 ratio) -2 -1 0 1at 2473.682 kb on + strand, within ABZR87_RS11670at 2473.683 kb on - strand, within ABZR87_RS11670at 2473.683 kb on - strand, within ABZR87_RS11670at 2473.860 kb on - strand, within ABZR87_RS11670at 2473.860 kb on - strand, within ABZR87_RS11670at 2473.860 kb on - strand, within ABZR87_RS11670at 2474.240 kb on - strand, within ABZR87_RS11670at 2474.547 kb on - strandat 2474.590 kb on + strandat 2474.707 kb on - strand, within ABZR87_RS11675at 2474.884 kb on + strand, within ABZR87_RS11675at 2474.884 kb on + strand, within ABZR87_RS11675at 2474.885 kb on - strand, within ABZR87_RS11675at 2474.885 kb on - strand, within ABZR87_RS11675at 2475.990 kb on - strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.991 kb on + strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2475.992 kb on - strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.111 kb on + strand, within ABZR87_RS11685at 2476.112 kb on - strand, within ABZR87_RS11685at 2476.112 kb on - strand, within ABZR87_RS11685

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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2,473,682 + ABZR87_RS11670 0.39 +0.5
2,473,683 - ABZR87_RS11670 0.39 -0.3
2,473,683 - ABZR87_RS11670 0.39 -0.7
2,473,860 - ABZR87_RS11670 0.51 -0.6
2,473,860 - ABZR87_RS11670 0.51 +0.2
2,473,860 - ABZR87_RS11670 0.51 -0.7
2,474,240 - ABZR87_RS11670 0.79 -0.4
2,474,547 - -1.9
2,474,590 + +0.2
2,474,707 - ABZR87_RS11675 0.15 +0.1
2,474,884 + ABZR87_RS11675 0.52 -1.1
2,474,884 + ABZR87_RS11675 0.52 -0.0
2,474,885 - ABZR87_RS11675 0.52 -1.8
2,474,885 - ABZR87_RS11675 0.52 -1.1
2,475,990 - ABZR87_RS11685 0.32 +0.1
2,475,991 + ABZR87_RS11685 0.32 -0.3
2,475,991 + ABZR87_RS11685 0.32 +0.2
2,475,991 + ABZR87_RS11685 0.32 +0.2
2,475,992 - ABZR87_RS11685 0.32 +1.0
2,475,992 - ABZR87_RS11685 0.32 +0.8
2,475,992 - ABZR87_RS11685 0.32 +0.2
2,476,111 + ABZR87_RS11685 0.43 -0.8
2,476,111 + ABZR87_RS11685 0.43 -0.5
2,476,111 + ABZR87_RS11685 0.43 +0.7
2,476,112 - ABZR87_RS11685 0.43 -0.5
2,476,112 - ABZR87_RS11685 0.43 -0.2

Or see this region's nucleotide sequence