Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11670 and ABZR87_RS11675 are separated by 109 nucleotides ABZR87_RS11675 and ABZR87_RS11680 are separated by 16 nucleotides ABZR87_RS11680 and ABZR87_RS11685 overlap by 18 nucleotides
ABZR87_RS11670: ABZR87_RS11670 - DNA repair protein RadA, at 2,473,154 to 2,474,524
_RS11670
ABZR87_RS11675: ABZR87_RS11675 - disulfide bond formation protein B, at 2,474,634 to 2,475,113
_RS11675
ABZR87_RS11680: ABZR87_RS11680 - DUF523 domain-containing protein, at 2,475,130 to 2,475,657
_RS11680
ABZR87_RS11685: ABZR87_RS11685 - CaiB/BaiF CoA-transferase family protein, at 2,475,640 to 2,476,746
_RS11685
Position (kb)
2474
2475
2476 Strain fitness (log2 ratio)
-2
-1
0
1 at 2473.682 kb on + strand, within ABZR87_RS11670 at 2473.683 kb on - strand, within ABZR87_RS11670 at 2473.683 kb on - strand, within ABZR87_RS11670 at 2473.860 kb on - strand, within ABZR87_RS11670 at 2473.860 kb on - strand, within ABZR87_RS11670 at 2473.860 kb on - strand, within ABZR87_RS11670 at 2474.240 kb on - strand, within ABZR87_RS11670 at 2474.547 kb on - strand at 2474.590 kb on + strand at 2474.707 kb on - strand, within ABZR87_RS11675 at 2474.884 kb on + strand, within ABZR87_RS11675 at 2474.884 kb on + strand, within ABZR87_RS11675 at 2474.885 kb on - strand, within ABZR87_RS11675 at 2474.885 kb on - strand, within ABZR87_RS11675 at 2475.990 kb on - strand, within ABZR87_RS11685 at 2475.991 kb on + strand, within ABZR87_RS11685 at 2475.991 kb on + strand, within ABZR87_RS11685 at 2475.991 kb on + strand, within ABZR87_RS11685 at 2475.992 kb on - strand, within ABZR87_RS11685 at 2475.992 kb on - strand, within ABZR87_RS11685 at 2475.992 kb on - strand, within ABZR87_RS11685 at 2476.111 kb on + strand, within ABZR87_RS11685 at 2476.111 kb on + strand, within ABZR87_RS11685 at 2476.111 kb on + strand, within ABZR87_RS11685 at 2476.112 kb on - strand, within ABZR87_RS11685 at 2476.112 kb on - strand, within ABZR87_RS11685
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,473,682 + ABZR87_RS11670 0.39 +0.5 2,473,683 - ABZR87_RS11670 0.39 -0.3 2,473,683 - ABZR87_RS11670 0.39 -0.7 2,473,860 - ABZR87_RS11670 0.51 -0.6 2,473,860 - ABZR87_RS11670 0.51 +0.2 2,473,860 - ABZR87_RS11670 0.51 -0.7 2,474,240 - ABZR87_RS11670 0.79 -0.4 2,474,547 - -1.9 2,474,590 + +0.2 2,474,707 - ABZR87_RS11675 0.15 +0.1 2,474,884 + ABZR87_RS11675 0.52 -1.1 2,474,884 + ABZR87_RS11675 0.52 -0.0 2,474,885 - ABZR87_RS11675 0.52 -1.8 2,474,885 - ABZR87_RS11675 0.52 -1.1 2,475,990 - ABZR87_RS11685 0.32 +0.1 2,475,991 + ABZR87_RS11685 0.32 -0.3 2,475,991 + ABZR87_RS11685 0.32 +0.2 2,475,991 + ABZR87_RS11685 0.32 +0.2 2,475,992 - ABZR87_RS11685 0.32 +1.0 2,475,992 - ABZR87_RS11685 0.32 +0.8 2,475,992 - ABZR87_RS11685 0.32 +0.2 2,476,111 + ABZR87_RS11685 0.43 -0.8 2,476,111 + ABZR87_RS11685 0.43 -0.5 2,476,111 + ABZR87_RS11685 0.43 +0.7 2,476,112 - ABZR87_RS11685 0.43 -0.5 2,476,112 - ABZR87_RS11685 0.43 -0.2
Or see this region's nucleotide sequence