Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10900 and ABZR87_RS10905 overlap by 4 nucleotides ABZR87_RS10905 and ABZR87_RS10910 overlap by 8 nucleotides ABZR87_RS10910 and ABZR87_RS10915 are separated by 49 nucleotides
ABZR87_RS10900: ABZR87_RS10900 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,308,065 to 2,309,216
_RS10900
ABZR87_RS10905: ABZR87_RS10905 - type IV pilus biogenesis/stability protein PilW, at 2,309,213 to 2,310,010
_RS10905
ABZR87_RS10910: ABZR87_RS10910 - RodZ family helix-turn-helix domain-containing protein, at 2,310,003 to 2,311,094
_RS10910
ABZR87_RS10915: ABZR87_RS10915 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,311,144 to 2,312,430
_RS10915
Position (kb)
2310
2311
2312 Strain fitness (log2 ratio)
-2
-1
0
1 at 2309.378 kb on + strand, within ABZR87_RS10905 at 2309.459 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.480 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.570 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.747 kb on + strand, within ABZR87_RS10905 at 2309.795 kb on + strand, within ABZR87_RS10905 at 2309.795 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.798 kb on + strand, within ABZR87_RS10905 at 2309.813 kb on + strand, within ABZR87_RS10905 at 2309.813 kb on + strand, within ABZR87_RS10905 at 2310.022 kb on + strand at 2310.248 kb on + strand, within ABZR87_RS10910 at 2310.392 kb on + strand, within ABZR87_RS10910 at 2310.479 kb on + strand, within ABZR87_RS10910
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,309,378 + ABZR87_RS10905 0.21 -2.0 2,309,459 + ABZR87_RS10905 0.31 +0.3 2,309,480 + ABZR87_RS10905 0.33 +0.0 2,309,480 + ABZR87_RS10905 0.33 -0.2 2,309,480 + ABZR87_RS10905 0.33 -0.6 2,309,570 + ABZR87_RS10905 0.45 -0.6 2,309,570 + ABZR87_RS10905 0.45 -1.7 2,309,570 + ABZR87_RS10905 0.45 -0.6 2,309,747 + ABZR87_RS10905 0.67 -0.9 2,309,747 + ABZR87_RS10905 0.67 +0.2 2,309,747 + ABZR87_RS10905 0.67 +0.2 2,309,795 + ABZR87_RS10905 0.73 +1.5 2,309,795 + ABZR87_RS10905 0.73 +0.5 2,309,798 + ABZR87_RS10905 0.73 -0.2 2,309,798 + ABZR87_RS10905 0.73 -1.0 2,309,798 + ABZR87_RS10905 0.73 -0.5 2,309,813 + ABZR87_RS10905 0.75 -1.3 2,309,813 + ABZR87_RS10905 0.75 -1.1 2,310,022 + +0.1 2,310,248 + ABZR87_RS10910 0.22 -0.9 2,310,392 + ABZR87_RS10910 0.36 -0.6 2,310,479 + ABZR87_RS10910 0.44 -0.7
Or see this region's nucleotide sequence