Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10910

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10900 and ABZR87_RS10905 overlap by 4 nucleotidesABZR87_RS10905 and ABZR87_RS10910 overlap by 8 nucleotidesABZR87_RS10910 and ABZR87_RS10915 are separated by 49 nucleotides ABZR87_RS10900: ABZR87_RS10900 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,308,065 to 2,309,216 _RS10900 ABZR87_RS10905: ABZR87_RS10905 - type IV pilus biogenesis/stability protein PilW, at 2,309,213 to 2,310,010 _RS10905 ABZR87_RS10910: ABZR87_RS10910 - RodZ family helix-turn-helix domain-containing protein, at 2,310,003 to 2,311,094 _RS10910 ABZR87_RS10915: ABZR87_RS10915 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 2,311,144 to 2,312,430 _RS10915 Position (kb) 2310 2311 2312Strain fitness (log2 ratio) -2 -1 0 1at 2309.378 kb on + strand, within ABZR87_RS10905at 2309.459 kb on + strand, within ABZR87_RS10905at 2309.480 kb on + strand, within ABZR87_RS10905at 2309.480 kb on + strand, within ABZR87_RS10905at 2309.480 kb on + strand, within ABZR87_RS10905at 2309.570 kb on + strand, within ABZR87_RS10905at 2309.570 kb on + strand, within ABZR87_RS10905at 2309.570 kb on + strand, within ABZR87_RS10905at 2309.747 kb on + strand, within ABZR87_RS10905at 2309.747 kb on + strand, within ABZR87_RS10905at 2309.747 kb on + strand, within ABZR87_RS10905at 2309.795 kb on + strand, within ABZR87_RS10905at 2309.795 kb on + strand, within ABZR87_RS10905at 2309.798 kb on + strand, within ABZR87_RS10905at 2309.798 kb on + strand, within ABZR87_RS10905at 2309.798 kb on + strand, within ABZR87_RS10905at 2309.813 kb on + strand, within ABZR87_RS10905at 2309.813 kb on + strand, within ABZR87_RS10905at 2310.022 kb on + strandat 2310.248 kb on + strand, within ABZR87_RS10910at 2310.392 kb on + strand, within ABZR87_RS10910at 2310.479 kb on + strand, within ABZR87_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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2,309,378 + ABZR87_RS10905 0.21 -2.0
2,309,459 + ABZR87_RS10905 0.31 +0.3
2,309,480 + ABZR87_RS10905 0.33 +0.0
2,309,480 + ABZR87_RS10905 0.33 -0.2
2,309,480 + ABZR87_RS10905 0.33 -0.6
2,309,570 + ABZR87_RS10905 0.45 -0.6
2,309,570 + ABZR87_RS10905 0.45 -1.7
2,309,570 + ABZR87_RS10905 0.45 -0.6
2,309,747 + ABZR87_RS10905 0.67 -0.9
2,309,747 + ABZR87_RS10905 0.67 +0.2
2,309,747 + ABZR87_RS10905 0.67 +0.2
2,309,795 + ABZR87_RS10905 0.73 +1.5
2,309,795 + ABZR87_RS10905 0.73 +0.5
2,309,798 + ABZR87_RS10905 0.73 -0.2
2,309,798 + ABZR87_RS10905 0.73 -1.0
2,309,798 + ABZR87_RS10905 0.73 -0.5
2,309,813 + ABZR87_RS10905 0.75 -1.3
2,309,813 + ABZR87_RS10905 0.75 -1.1
2,310,022 + +0.1
2,310,248 + ABZR87_RS10910 0.22 -0.9
2,310,392 + ABZR87_RS10910 0.36 -0.6
2,310,479 + ABZR87_RS10910 0.44 -0.7

Or see this region's nucleotide sequence