Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10795 and ABZR87_RS10800 are separated by 85 nucleotides ABZR87_RS10800 and ABZR87_RS10805 are separated by 23 nucleotides ABZR87_RS10805 and ABZR87_RS10810 overlap by 1 nucleotides ABZR87_RS10810 and ABZR87_RS10815 are separated by 17 nucleotides
ABZR87_RS10795: ABZR87_RS10795 - DNA polymerase III subunit gamma/tau, at 2,287,047 to 2,289,251
_RS10795
ABZR87_RS10800: ABZR87_RS10800 - YbaB/EbfC family nucleoid-associated protein, at 2,289,337 to 2,289,684
_RS10800
ABZR87_RS10805: ABZR87_RS10805 - antibiotic biosynthesis monooxygenase, at 2,289,708 to 2,290,007
_RS10805
ABZR87_RS10810: ABZR87_RS10810 - recombination mediator RecR, at 2,290,007 to 2,290,627
_RS10810
ABZR87_RS10815: ABZR87_RS10815 - carbohydrate porin, at 2,290,645 to 2,291,934
_RS10815
Position (kb)
2289
2290 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2289.586 kb on - strand, within ABZR87_RS10800 at 2289.601 kb on - strand, within ABZR87_RS10800 at 2289.601 kb on - strand, within ABZR87_RS10800 at 2289.643 kb on - strand, within ABZR87_RS10800 at 2289.648 kb on + strand, within ABZR87_RS10800 at 2289.649 kb on - strand, within ABZR87_RS10800 at 2289.649 kb on - strand, within ABZR87_RS10800 at 2289.683 kb on - strand at 2289.855 kb on + strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.856 kb on - strand, within ABZR87_RS10805 at 2289.921 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.954 kb on + strand, within ABZR87_RS10805 at 2289.955 kb on - strand, within ABZR87_RS10805 at 2290.012 kb on + strand at 2290.013 kb on - strand at 2290.024 kb on + strand at 2290.024 kb on + strand at 2290.024 kb on + strand at 2290.025 kb on - strand at 2290.107 kb on - strand, within ABZR87_RS10810 at 2290.201 kb on + strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.202 kb on - strand, within ABZR87_RS10810 at 2290.207 kb on + strand, within ABZR87_RS10810 at 2290.207 kb on + strand, within ABZR87_RS10810 at 2290.316 kb on + strand, within ABZR87_RS10810 at 2290.316 kb on + strand, within ABZR87_RS10810 at 2290.328 kb on + strand, within ABZR87_RS10810 at 2290.329 kb on - strand, within ABZR87_RS10810 at 2290.329 kb on - strand, within ABZR87_RS10810 at 2290.493 kb on + strand, within ABZR87_RS10810 at 2290.493 kb on + strand, within ABZR87_RS10810 at 2290.574 kb on + strand at 2290.574 kb on + strand at 2290.574 kb on + strand at 2290.575 kb on - strand at 2290.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,289,586 - ABZR87_RS10800 0.72 +1.0 2,289,601 - ABZR87_RS10800 0.76 +1.1 2,289,601 - ABZR87_RS10800 0.76 -2.2 2,289,643 - ABZR87_RS10800 0.88 -0.6 2,289,648 + ABZR87_RS10800 0.89 +0.4 2,289,649 - ABZR87_RS10800 0.90 +1.3 2,289,649 - ABZR87_RS10800 0.90 +2.2 2,289,683 - +0.2 2,289,855 + ABZR87_RS10805 0.49 +0.4 2,289,856 - ABZR87_RS10805 0.49 +0.4 2,289,856 - ABZR87_RS10805 0.49 +0.3 2,289,856 - ABZR87_RS10805 0.49 -0.1 2,289,921 + ABZR87_RS10805 0.71 +0.5 2,289,954 + ABZR87_RS10805 0.82 +0.0 2,289,954 + ABZR87_RS10805 0.82 +2.0 2,289,954 + ABZR87_RS10805 0.82 -0.0 2,289,955 - ABZR87_RS10805 0.82 +0.2 2,290,012 + -0.4 2,290,013 - -0.3 2,290,024 + +3.6 2,290,024 + +0.8 2,290,024 + +0.8 2,290,025 - -1.1 2,290,107 - ABZR87_RS10810 0.16 +0.2 2,290,201 + ABZR87_RS10810 0.31 +0.2 2,290,202 - ABZR87_RS10810 0.31 -1.3 2,290,202 - ABZR87_RS10810 0.31 -0.8 2,290,202 - ABZR87_RS10810 0.31 +0.2 2,290,207 + ABZR87_RS10810 0.32 -0.3 2,290,207 + ABZR87_RS10810 0.32 +0.9 2,290,316 + ABZR87_RS10810 0.50 -0.3 2,290,316 + ABZR87_RS10810 0.50 -0.4 2,290,328 + ABZR87_RS10810 0.52 +0.3 2,290,329 - ABZR87_RS10810 0.52 -1.3 2,290,329 - ABZR87_RS10810 0.52 -0.3 2,290,493 + ABZR87_RS10810 0.78 +0.8 2,290,493 + ABZR87_RS10810 0.78 -0.5 2,290,574 + -0.5 2,290,574 + -0.1 2,290,574 + -0.4 2,290,575 - -1.8 2,290,575 - +1.0
Or see this region's nucleotide sequence