Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09530 and ABZR87_RS09535 overlap by 11 nucleotides ABZR87_RS09535 and ABZR87_RS09540 are separated by 33 nucleotides
ABZR87_RS09530: ABZR87_RS09530 - methionine ABC transporter ATP-binding protein, at 2,023,872 to 2,024,921
_RS09530
ABZR87_RS09535: ABZR87_RS09535 - methionine ABC transporter permease, at 2,024,911 to 2,025,564
_RS09535
ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398
_RS09540
Position (kb)
2024
2025
2026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.081 kb on + strand, within ABZR87_RS09530 at 2024.082 kb on - strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.172 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.754 kb on + strand, within ABZR87_RS09530 at 2024.755 kb on - strand, within ABZR87_RS09530 at 2024.786 kb on + strand, within ABZR87_RS09530 at 2025.025 kb on + strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.026 kb on - strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.313 kb on + strand, within ABZR87_RS09535 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.859 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2026.196 kb on - strand, within ABZR87_RS09540 at 2026.196 kb on - strand, within ABZR87_RS09540 at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.370 kb on - strand at 2026.370 kb on - strand at 2026.396 kb on + strand at 2026.426 kb on + strand at 2026.436 kb on + strand at 2026.436 kb on + strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.536 kb on + strand at 2026.536 kb on + strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 2,024,081 + ABZR87_RS09530 0.20 -0.3 2,024,081 + ABZR87_RS09530 0.20 -0.0 2,024,081 + ABZR87_RS09530 0.20 +0.9 2,024,081 + ABZR87_RS09530 0.20 +0.1 2,024,082 - ABZR87_RS09530 0.20 +0.3 2,024,172 + ABZR87_RS09530 0.29 +0.6 2,024,172 + ABZR87_RS09530 0.29 -0.3 2,024,172 + ABZR87_RS09530 0.29 +0.4 2,024,754 + ABZR87_RS09530 0.84 +0.5 2,024,754 + ABZR87_RS09530 0.84 -0.4 2,024,755 - ABZR87_RS09530 0.84 -0.1 2,024,786 + ABZR87_RS09530 0.87 -0.4 2,025,025 + ABZR87_RS09535 0.17 +0.3 2,025,026 - ABZR87_RS09535 0.18 -0.0 2,025,026 - ABZR87_RS09535 0.18 +0.1 2,025,313 + ABZR87_RS09535 0.61 +1.3 2,025,313 + ABZR87_RS09535 0.61 -0.2 2,025,793 + ABZR87_RS09540 0.24 -0.5 2,025,793 + ABZR87_RS09540 0.24 -0.2 2,025,793 + ABZR87_RS09540 0.24 +0.4 2,025,794 - ABZR87_RS09540 0.24 +0.0 2,025,794 - ABZR87_RS09540 0.24 -0.9 2,025,844 + ABZR87_RS09540 0.31 +0.2 2,025,844 + ABZR87_RS09540 0.31 +0.2 2,025,844 + ABZR87_RS09540 0.31 -0.4 2,025,844 + ABZR87_RS09540 0.31 +0.7 2,025,845 - ABZR87_RS09540 0.31 -1.0 2,025,845 - ABZR87_RS09540 0.31 +0.3 2,025,845 - ABZR87_RS09540 0.31 +0.1 2,025,845 - ABZR87_RS09540 0.31 -2.1 2,025,859 + ABZR87_RS09540 0.33 -0.6 2,025,937 + ABZR87_RS09540 0.42 -0.0 2,025,937 + ABZR87_RS09540 0.42 +0.3 2,025,937 + ABZR87_RS09540 0.42 +0.7 2,025,938 - ABZR87_RS09540 0.42 +0.3 2,025,938 - ABZR87_RS09540 0.42 -0.6 2,025,938 - ABZR87_RS09540 0.42 -0.1 2,026,196 - ABZR87_RS09540 0.75 +0.3 2,026,196 - ABZR87_RS09540 0.75 +0.6 2,026,330 + -0.5 2,026,330 + -0.3 2,026,330 + -0.2 2,026,330 + -0.1 2,026,330 + +0.2 2,026,330 + +0.0 2,026,330 + +2.4 2,026,330 + +0.2 2,026,331 - +0.3 2,026,331 - -0.6 2,026,331 - -0.1 2,026,331 - -0.2 2,026,369 + -0.8 2,026,369 + -0.8 2,026,369 + +0.6 2,026,369 + +0.1 2,026,370 - -0.2 2,026,370 - +1.0 2,026,396 + -0.5 2,026,426 + +0.2 2,026,436 + +0.5 2,026,436 + -0.0 2,026,437 - +0.4 2,026,437 - +0.2 2,026,437 - -1.0 2,026,437 - -0.9 2,026,437 - -0.3 2,026,437 - -0.2 2,026,437 - +0.4 2,026,437 - +0.7 2,026,437 - -0.6 2,026,437 - +0.9 2,026,536 + -0.6 2,026,536 + -0.8 2,026,537 - -0.6 2,026,537 - -0.0 2,026,537 - -0.4 2,026,537 - +0.0 2,026,537 - -1.2 2,026,537 - -2.1 2,026,538 + -0.1 2,026,538 + +0.5 2,026,538 + +1.3 2,026,538 + -0.5 2,026,538 + +1.3
Or see this region's nucleotide sequence