Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08970

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08960 and ABZR87_RS08965 are separated by 69 nucleotidesABZR87_RS08965 and ABZR87_RS08970 overlap by 4 nucleotidesABZR87_RS08970 and ABZR87_RS08975 are separated by 12 nucleotidesABZR87_RS08975 and ABZR87_RS08980 are separated by 37 nucleotides ABZR87_RS08960: ABZR87_RS08960 - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 1,902,850 to 1,903,602 _RS08960 ABZR87_RS08965: ABZR87_RS08965 - tol-pal system-associated acyl-CoA thioesterase, at 1,903,672 to 1,904,076 _RS08965 ABZR87_RS08970: ABZR87_RS08970 - protein TolQ, at 1,904,073 to 1,904,765 _RS08970 ABZR87_RS08975: ABZR87_RS08975 - protein TolR, at 1,904,778 to 1,905,212 _RS08975 ABZR87_RS08980: ABZR87_RS08980 - cell envelope integrity protein TolA, at 1,905,250 to 1,906,278 _RS08980 Position (kb) 1904 1905Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1903.185 kb on + strand, within ABZR87_RS08960at 1903.185 kb on + strand, within ABZR87_RS08960at 1903.185 kb on + strand, within ABZR87_RS08960at 1903.185 kb on + strand, within ABZR87_RS08960at 1903.186 kb on - strand, within ABZR87_RS08960at 1903.186 kb on - strand, within ABZR87_RS08960at 1903.186 kb on - strand, within ABZR87_RS08960at 1903.199 kb on + strand, within ABZR87_RS08960at 1903.200 kb on - strand, within ABZR87_RS08960at 1903.200 kb on - strand, within ABZR87_RS08960at 1903.200 kb on - strand, within ABZR87_RS08960at 1903.200 kb on - strand, within ABZR87_RS08960at 1903.242 kb on + strand, within ABZR87_RS08960at 1903.243 kb on - strand, within ABZR87_RS08960at 1903.243 kb on - strand, within ABZR87_RS08960at 1903.243 kb on - strand, within ABZR87_RS08960at 1903.243 kb on - strand, within ABZR87_RS08960at 1903.264 kb on + strand, within ABZR87_RS08960at 1903.264 kb on + strand, within ABZR87_RS08960at 1903.264 kb on + strand, within ABZR87_RS08960at 1903.265 kb on - strand, within ABZR87_RS08960at 1903.265 kb on - strand, within ABZR87_RS08960at 1903.288 kb on + strand, within ABZR87_RS08960at 1903.288 kb on + strand, within ABZR87_RS08960at 1903.288 kb on + strand, within ABZR87_RS08960at 1903.289 kb on - strand, within ABZR87_RS08960at 1903.289 kb on - strand, within ABZR87_RS08960at 1903.289 kb on - strand, within ABZR87_RS08960at 1903.289 kb on - strand, within ABZR87_RS08960at 1903.289 kb on - strand, within ABZR87_RS08960at 1903.365 kb on - strand, within ABZR87_RS08960at 1903.450 kb on + strand, within ABZR87_RS08960at 1903.450 kb on + strand, within ABZR87_RS08960at 1903.450 kb on + strand, within ABZR87_RS08960at 1903.450 kb on + strand, within ABZR87_RS08960at 1903.451 kb on - strand, within ABZR87_RS08960at 1903.451 kb on - strand, within ABZR87_RS08960at 1903.482 kb on + strand, within ABZR87_RS08960at 1903.499 kb on - strand, within ABZR87_RS08960at 1903.499 kb on - strand, within ABZR87_RS08960at 1903.499 kb on - strand, within ABZR87_RS08960at 1903.660 kb on + strandat 1903.666 kb on + strandat 1903.702 kb on + strandat 1903.702 kb on + strandat 1903.703 kb on - strandat 1903.703 kb on - strandat 1903.703 kb on - strandat 1903.713 kb on + strand, within ABZR87_RS08965at 1903.713 kb on + strand, within ABZR87_RS08965at 1903.738 kb on + strand, within ABZR87_RS08965at 1903.739 kb on - strand, within ABZR87_RS08965at 1903.747 kb on + strand, within ABZR87_RS08965at 1903.748 kb on - strand, within ABZR87_RS08965at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.287 kb on - strand, within ABZR87_RS08970at 1904.287 kb on - strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.442 kb on + strand, within ABZR87_RS08970at 1904.442 kb on + strand, within ABZR87_RS08970at 1904.443 kb on - strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.670 kb on + strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.680 kb on - strand, within ABZR87_RS08970at 1904.783 kb on + strandat 1905.133 kb on - strand, within ABZR87_RS08975at 1905.256 kb on - strandat 1905.256 kb on - strandat 1905.274 kb on + strandat 1905.274 kb on + strandat 1905.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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1,903,185 + ABZR87_RS08960 0.44 +0.5
1,903,185 + ABZR87_RS08960 0.44 +0.2
1,903,185 + ABZR87_RS08960 0.44 -1.2
1,903,185 + ABZR87_RS08960 0.44 +0.3
1,903,186 - ABZR87_RS08960 0.45 -0.6
1,903,186 - ABZR87_RS08960 0.45 -0.4
1,903,186 - ABZR87_RS08960 0.45 +0.4
1,903,199 + ABZR87_RS08960 0.46 -1.4
1,903,200 - ABZR87_RS08960 0.46 -0.6
1,903,200 - ABZR87_RS08960 0.46 -0.6
1,903,200 - ABZR87_RS08960 0.46 +0.4
1,903,200 - ABZR87_RS08960 0.46 +0.2
1,903,242 + ABZR87_RS08960 0.52 -2.2
1,903,243 - ABZR87_RS08960 0.52 -0.3
1,903,243 - ABZR87_RS08960 0.52 -0.3
1,903,243 - ABZR87_RS08960 0.52 -0.5
1,903,243 - ABZR87_RS08960 0.52 +0.3
1,903,264 + ABZR87_RS08960 0.55 +1.3
1,903,264 + ABZR87_RS08960 0.55 +0.3
1,903,264 + ABZR87_RS08960 0.55 +1.5
1,903,265 - ABZR87_RS08960 0.55 +0.4
1,903,265 - ABZR87_RS08960 0.55 +0.2
1,903,288 + ABZR87_RS08960 0.58 +0.1
1,903,288 + ABZR87_RS08960 0.58 +0.8
1,903,288 + ABZR87_RS08960 0.58 -0.1
1,903,289 - ABZR87_RS08960 0.58 +0.4
1,903,289 - ABZR87_RS08960 0.58 +0.2
1,903,289 - ABZR87_RS08960 0.58 +0.3
1,903,289 - ABZR87_RS08960 0.58 -0.3
1,903,289 - ABZR87_RS08960 0.58 +0.1
1,903,365 - ABZR87_RS08960 0.68 -0.1
1,903,450 + ABZR87_RS08960 0.80 +1.2
1,903,450 + ABZR87_RS08960 0.80 +0.5
1,903,450 + ABZR87_RS08960 0.80 -0.2
1,903,450 + ABZR87_RS08960 0.80 +1.9
1,903,451 - ABZR87_RS08960 0.80 -1.6
1,903,451 - ABZR87_RS08960 0.80 +1.5
1,903,482 + ABZR87_RS08960 0.84 -0.5
1,903,499 - ABZR87_RS08960 0.86 +0.1
1,903,499 - ABZR87_RS08960 0.86 +0.1
1,903,499 - ABZR87_RS08960 0.86 +0.1
1,903,660 + +0.7
1,903,666 + -1.0
1,903,702 + -0.5
1,903,702 + +1.3
1,903,703 - -1.8
1,903,703 - -0.5
1,903,703 - -1.9
1,903,713 + ABZR87_RS08965 0.10 +0.8
1,903,713 + ABZR87_RS08965 0.10 -0.1
1,903,738 + ABZR87_RS08965 0.16 -0.4
1,903,739 - ABZR87_RS08965 0.17 -0.3
1,903,747 + ABZR87_RS08965 0.19 +0.4
1,903,748 - ABZR87_RS08965 0.19 -1.4
1,904,190 + ABZR87_RS08970 0.17 -1.1
1,904,190 + ABZR87_RS08970 0.17 -0.4
1,904,190 + ABZR87_RS08970 0.17 -0.1
1,904,190 + ABZR87_RS08970 0.17 -0.1
1,904,190 + ABZR87_RS08970 0.17 -1.1
1,904,190 + ABZR87_RS08970 0.17 -1.1
1,904,191 - ABZR87_RS08970 0.17 -0.4
1,904,191 - ABZR87_RS08970 0.17 -0.2
1,904,191 - ABZR87_RS08970 0.17 +2.9
1,904,191 - ABZR87_RS08970 0.17 -0.4
1,904,191 - ABZR87_RS08970 0.17 +1.4
1,904,191 - ABZR87_RS08970 0.17 -2.3
1,904,191 - ABZR87_RS08970 0.17 -1.1
1,904,191 - ABZR87_RS08970 0.17 -1.0
1,904,191 - ABZR87_RS08970 0.17 +0.4
1,904,191 - ABZR87_RS08970 0.17 -0.9
1,904,191 - ABZR87_RS08970 0.17 -1.2
1,904,191 - ABZR87_RS08970 0.17 +0.8
1,904,191 - ABZR87_RS08970 0.17 +0.8
1,904,287 - ABZR87_RS08970 0.31 +0.4
1,904,287 - ABZR87_RS08970 0.31 -0.9
1,904,429 + ABZR87_RS08970 0.51 +0.4
1,904,429 + ABZR87_RS08970 0.51 -2.1
1,904,429 + ABZR87_RS08970 0.51 -0.4
1,904,430 - ABZR87_RS08970 0.52 -1.1
1,904,430 - ABZR87_RS08970 0.52 +0.9
1,904,430 - ABZR87_RS08970 0.52 -1.2
1,904,430 - ABZR87_RS08970 0.52 -0.1
1,904,442 + ABZR87_RS08970 0.53 -2.4
1,904,442 + ABZR87_RS08970 0.53 -0.5
1,904,443 - ABZR87_RS08970 0.53 -1.0
1,904,511 + ABZR87_RS08970 0.63 -0.6
1,904,511 + ABZR87_RS08970 0.63 -0.9
1,904,511 + ABZR87_RS08970 0.63 -1.2
1,904,512 - ABZR87_RS08970 0.63 -0.6
1,904,512 - ABZR87_RS08970 0.63 -0.4
1,904,512 - ABZR87_RS08970 0.63 -1.1
1,904,670 + ABZR87_RS08970 0.86 -0.2
1,904,671 - ABZR87_RS08970 0.86 -0.5
1,904,671 - ABZR87_RS08970 0.86 +0.4
1,904,671 - ABZR87_RS08970 0.86 -0.9
1,904,680 - ABZR87_RS08970 0.88 -0.2
1,904,783 + -2.5
1,905,133 - ABZR87_RS08975 0.82 +1.1
1,905,256 - +0.6
1,905,256 - -1.4
1,905,274 + +0.9
1,905,274 + +0.4
1,905,275 - -0.4

Or see this region's nucleotide sequence