Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07630 and ABZR87_RS07635 are separated by 79 nucleotides ABZR87_RS07635 and ABZR87_RS07640 are separated by 83 nucleotides
ABZR87_RS07630: ABZR87_RS07630 - glycerophosphodiester phosphodiesterase, at 1,616,296 to 1,617,438
_RS07630
ABZR87_RS07635: ABZR87_RS07635 - crossover junction endodeoxyribonuclease RuvC, at 1,617,518 to 1,618,063
_RS07635
ABZR87_RS07640: ABZR87_RS07640 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 1,618,147 to 1,619,721
_RS07640
Position (kb)
1617
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1616.594 kb on + strand, within ABZR87_RS07630 at 1616.708 kb on - strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.783 kb on + strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.784 kb on - strand, within ABZR87_RS07630 at 1616.867 kb on - strand, within ABZR87_RS07630 at 1616.870 kb on + strand, within ABZR87_RS07630 at 1616.871 kb on - strand, within ABZR87_RS07630 at 1616.895 kb on - strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.205 kb on + strand, within ABZR87_RS07630 at 1617.206 kb on - strand, within ABZR87_RS07630 at 1617.206 kb on - strand, within ABZR87_RS07630 at 1617.251 kb on + strand, within ABZR87_RS07630 at 1617.322 kb on - strand, within ABZR87_RS07630 at 1617.362 kb on + strand at 1617.459 kb on + strand at 1617.459 kb on + strand at 1617.460 kb on - strand at 1617.471 kb on + strand at 1617.471 kb on + strand at 1617.507 kb on + strand at 1617.508 kb on - strand at 1617.562 kb on + strand at 1617.563 kb on - strand at 1617.889 kb on - strand, within ABZR87_RS07635 at 1617.918 kb on + strand, within ABZR87_RS07635 at 1617.919 kb on - strand, within ABZR87_RS07635 at 1617.919 kb on - strand, within ABZR87_RS07635 at 1617.920 kb on + strand, within ABZR87_RS07635 at 1617.920 kb on + strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.921 kb on - strand, within ABZR87_RS07635 at 1617.985 kb on - strand, within ABZR87_RS07635 at 1618.108 kb on + strand at 1618.108 kb on + strand at 1618.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,616,594 + ABZR87_RS07630 0.26 -0.4 1,616,708 - ABZR87_RS07630 0.36 -2.2 1,616,783 + ABZR87_RS07630 0.43 -0.4 1,616,783 + ABZR87_RS07630 0.43 -0.4 1,616,783 + ABZR87_RS07630 0.43 -0.8 1,616,784 - ABZR87_RS07630 0.43 -0.1 1,616,784 - ABZR87_RS07630 0.43 +0.3 1,616,784 - ABZR87_RS07630 0.43 +0.7 1,616,784 - ABZR87_RS07630 0.43 -0.4 1,616,867 - ABZR87_RS07630 0.50 +0.8 1,616,870 + ABZR87_RS07630 0.50 -0.4 1,616,871 - ABZR87_RS07630 0.50 +0.7 1,616,895 - ABZR87_RS07630 0.52 +0.5 1,617,205 + ABZR87_RS07630 0.80 +0.5 1,617,205 + ABZR87_RS07630 0.80 -0.3 1,617,205 + ABZR87_RS07630 0.80 -1.2 1,617,206 - ABZR87_RS07630 0.80 +0.7 1,617,206 - ABZR87_RS07630 0.80 +1.0 1,617,251 + ABZR87_RS07630 0.84 +0.0 1,617,322 - ABZR87_RS07630 0.90 -0.2 1,617,362 + -0.4 1,617,459 + +0.1 1,617,459 + -0.9 1,617,460 - +0.0 1,617,471 + +0.3 1,617,471 + -0.2 1,617,507 + -0.5 1,617,508 - +0.2 1,617,562 + -1.1 1,617,563 - -0.6 1,617,889 - ABZR87_RS07635 0.68 -2.3 1,617,918 + ABZR87_RS07635 0.73 +1.4 1,617,919 - ABZR87_RS07635 0.73 +0.9 1,617,919 - ABZR87_RS07635 0.73 -1.1 1,617,920 + ABZR87_RS07635 0.74 -0.9 1,617,920 + ABZR87_RS07635 0.74 +2.6 1,617,921 - ABZR87_RS07635 0.74 -1.6 1,617,921 - ABZR87_RS07635 0.74 -0.4 1,617,921 - ABZR87_RS07635 0.74 -1.1 1,617,985 - ABZR87_RS07635 0.86 -1.1 1,618,108 + +0.6 1,618,108 + -0.4 1,618,149 - +0.3
Or see this region's nucleotide sequence