Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06995 and ABZR87_RS07000 are separated by 50 nucleotides ABZR87_RS07000 and ABZR87_RS07005 are separated by 14 nucleotides ABZR87_RS07005 and ABZR87_RS07010 overlap by 1 nucleotides
ABZR87_RS06995: ABZR87_RS06995 - tRNA-Gln, at 1,477,708 to 1,477,784
_RS06995
ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704
_RS07000
ABZR87_RS07005: ABZR87_RS07005 - lipoprotein insertase outer membrane protein LolB, at 1,478,719 to 1,479,342
_RS07005
ABZR87_RS07010: ABZR87_RS07010 - tetratricopeptide repeat protein, at 1,479,342 to 1,481,279
_RS07010
Position (kb) 1478
1479
1480 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1478.721 kb on - strand at 1478.721 kb on - strand at 1478.843 kb on + strand, within ABZR87_RS07005 at 1478.844 kb on - strand, within ABZR87_RS07005 at 1478.844 kb on - strand, within ABZR87_RS07005 at 1479.180 kb on - strand, within ABZR87_RS07005 at 1479.180 kb on - strand, within ABZR87_RS07005 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.608 kb on - strand, within ABZR87_RS07010 at 1479.707 kb on - strand, within ABZR87_RS07010 at 1479.707 kb on - strand, within ABZR87_RS07010 at 1479.707 kb on - strand, within ABZR87_RS07010 at 1479.707 kb on - strand, within ABZR87_RS07010 at 1479.769 kb on + strand, within ABZR87_RS07010 at 1479.770 kb on - strand, within ABZR87_RS07010 at 1479.806 kb on - strand, within ABZR87_RS07010 at 1479.812 kb on - strand, within ABZR87_RS07010 at 1479.812 kb on - strand, within ABZR87_RS07010 at 1480.163 kb on - strand, within ABZR87_RS07010 at 1480.210 kb on + strand, within ABZR87_RS07010 at 1480.211 kb on - strand, within ABZR87_RS07010 at 1480.211 kb on - strand, within ABZR87_RS07010 at 1480.211 kb on - strand, within ABZR87_RS07010 at 1480.211 kb on - strand, within ABZR87_RS07010 at 1480.211 kb on - strand, within ABZR87_RS07010 at 1480.223 kb on - strand, within ABZR87_RS07010 at 1480.223 kb on - strand, within ABZR87_RS07010 at 1480.241 kb on - strand, within ABZR87_RS07010
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,478,721 - -0.6 1,478,721 - +0.0 1,478,843 + ABZR87_RS07005 0.20 -0.5 1,478,844 - ABZR87_RS07005 0.20 -1.4 1,478,844 - ABZR87_RS07005 0.20 -1.5 1,479,180 - ABZR87_RS07005 0.74 -1.8 1,479,180 - ABZR87_RS07005 0.74 -2.0 1,479,608 - ABZR87_RS07010 0.14 -0.1 1,479,608 - ABZR87_RS07010 0.14 +1.9 1,479,608 - ABZR87_RS07010 0.14 +1.3 1,479,608 - ABZR87_RS07010 0.14 +1.3 1,479,608 - ABZR87_RS07010 0.14 +0.5 1,479,608 - ABZR87_RS07010 0.14 +0.2 1,479,608 - ABZR87_RS07010 0.14 +0.7 1,479,608 - ABZR87_RS07010 0.14 -0.5 1,479,707 - ABZR87_RS07010 0.19 -0.6 1,479,707 - ABZR87_RS07010 0.19 -0.5 1,479,707 - ABZR87_RS07010 0.19 +1.4 1,479,707 - ABZR87_RS07010 0.19 +1.5 1,479,769 + ABZR87_RS07010 0.22 +0.3 1,479,770 - ABZR87_RS07010 0.22 +0.8 1,479,806 - ABZR87_RS07010 0.24 -0.1 1,479,812 - ABZR87_RS07010 0.24 -2.1 1,479,812 - ABZR87_RS07010 0.24 +0.4 1,480,163 - ABZR87_RS07010 0.42 +0.7 1,480,210 + ABZR87_RS07010 0.45 +0.3 1,480,211 - ABZR87_RS07010 0.45 -0.1 1,480,211 - ABZR87_RS07010 0.45 -0.2 1,480,211 - ABZR87_RS07010 0.45 -0.5 1,480,211 - ABZR87_RS07010 0.45 +3.4 1,480,211 - ABZR87_RS07010 0.45 +0.5 1,480,223 - ABZR87_RS07010 0.45 +1.9 1,480,223 - ABZR87_RS07010 0.45 +0.9 1,480,241 - ABZR87_RS07010 0.46 +0.2
Or see this region's nucleotide sequence