Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06490 and ABZR87_RS06495 are separated by 74 nucleotides ABZR87_RS06495 and ABZR87_RS06500 are separated by 4 nucleotides ABZR87_RS06500 and ABZR87_RS06505 are separated by 101 nucleotides
ABZR87_RS06490: ABZR87_RS06490 - ferritin, at 1,382,153 to 1,383,007
_RS06490
ABZR87_RS06495: ABZR87_RS06495 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 1,383,082 to 1,383,579
_RS06495
ABZR87_RS06500: ABZR87_RS06500 - SPOR domain-containing protein, at 1,383,584 to 1,384,357
_RS06500
ABZR87_RS06505: ABZR87_RS06505 - type III pantothenate kinase, at 1,384,459 to 1,385,340
_RS06505
Position (kb)
1383
1384 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1382.122 kb on + strand at 1382.122 kb on + strand at 1382.149 kb on + strand at 1382.149 kb on + strand at 1382.149 kb on + strand at 1382.658 kb on - strand, within ABZR87_RS06490 at 1383.223 kb on + strand, within ABZR87_RS06495 at 1383.436 kb on + strand, within ABZR87_RS06495 at 1383.437 kb on - strand, within ABZR87_RS06495 at 1383.492 kb on + strand, within ABZR87_RS06495 at 1383.493 kb on - strand, within ABZR87_RS06495 at 1383.493 kb on - strand, within ABZR87_RS06495 at 1383.493 kb on - strand, within ABZR87_RS06495 at 1383.586 kb on - strand at 1383.832 kb on + strand, within ABZR87_RS06500 at 1383.832 kb on + strand, within ABZR87_RS06500 at 1383.832 kb on + strand, within ABZR87_RS06500 at 1383.832 kb on + strand, within ABZR87_RS06500 at 1383.832 kb on + strand, within ABZR87_RS06500 at 1383.833 kb on - strand, within ABZR87_RS06500 at 1383.833 kb on - strand, within ABZR87_RS06500 at 1383.833 kb on - strand, within ABZR87_RS06500 at 1384.158 kb on - strand, within ABZR87_RS06500 at 1384.420 kb on + strand at 1384.421 kb on - strand at 1384.460 kb on + strand at 1384.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,382,122 + +0.0 1,382,122 + -0.3 1,382,149 + +2.1 1,382,149 + -0.5 1,382,149 + +1.3 1,382,658 - ABZR87_RS06490 0.59 -0.5 1,383,223 + ABZR87_RS06495 0.28 -1.2 1,383,436 + ABZR87_RS06495 0.71 -0.2 1,383,437 - ABZR87_RS06495 0.71 +0.0 1,383,492 + ABZR87_RS06495 0.82 +3.4 1,383,493 - ABZR87_RS06495 0.83 -1.2 1,383,493 - ABZR87_RS06495 0.83 -0.5 1,383,493 - ABZR87_RS06495 0.83 +0.3 1,383,586 - -0.1 1,383,832 + ABZR87_RS06500 0.32 -0.7 1,383,832 + ABZR87_RS06500 0.32 +0.3 1,383,832 + ABZR87_RS06500 0.32 -1.3 1,383,832 + ABZR87_RS06500 0.32 +0.3 1,383,832 + ABZR87_RS06500 0.32 +0.6 1,383,833 - ABZR87_RS06500 0.32 -0.1 1,383,833 - ABZR87_RS06500 0.32 -1.7 1,383,833 - ABZR87_RS06500 0.32 -0.5 1,384,158 - ABZR87_RS06500 0.74 +0.8 1,384,420 + +0.1 1,384,421 - -1.3 1,384,460 + -0.2 1,384,461 - +0.5
Or see this region's nucleotide sequence