Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06160

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06155 and ABZR87_RS06160 are separated by 210 nucleotidesABZR87_RS06160 and ABZR87_RS06165 are separated by 100 nucleotidesABZR87_RS06165 and ABZR87_RS06170 are separated by 137 nucleotides ABZR87_RS06155: ABZR87_RS06155 - DUF1254 domain-containing protein, at 1,311,807 to 1,313,279 _RS06155 ABZR87_RS06160: ABZR87_RS06160 - nitronate monooxygenase family protein, at 1,313,490 to 1,314,473 _RS06160 ABZR87_RS06165: ABZR87_RS06165 - type 1 glutamine amidotransferase domain-containing protein, at 1,314,574 to 1,315,122 _RS06165 ABZR87_RS06170: ABZR87_RS06170 - alpha/beta hydrolase, at 1,315,260 to 1,316,186 _RS06170 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.514 kb on - strand, within ABZR87_RS06155at 1312.808 kb on - strand, within ABZR87_RS06155at 1312.808 kb on - strand, within ABZR87_RS06155at 1312.971 kb on + strand, within ABZR87_RS06155at 1312.972 kb on - strand, within ABZR87_RS06155at 1313.029 kb on - strand, within ABZR87_RS06155at 1313.098 kb on + strand, within ABZR87_RS06155at 1313.099 kb on - strand, within ABZR87_RS06155at 1313.099 kb on - strand, within ABZR87_RS06155at 1313.104 kb on + strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.105 kb on - strand, within ABZR87_RS06155at 1313.180 kb on + strandat 1313.181 kb on - strandat 1313.357 kb on + strandat 1313.358 kb on - strandat 1313.419 kb on + strandat 1313.419 kb on + strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.420 kb on - strandat 1313.534 kb on - strandat 1313.728 kb on + strand, within ABZR87_RS06160at 1313.728 kb on + strand, within ABZR87_RS06160at 1313.728 kb on + strand, within ABZR87_RS06160at 1313.729 kb on - strand, within ABZR87_RS06160at 1313.729 kb on - strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.761 kb on + strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.762 kb on - strand, within ABZR87_RS06160at 1313.803 kb on + strand, within ABZR87_RS06160at 1313.803 kb on + strand, within ABZR87_RS06160at 1313.804 kb on - strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.854 kb on + strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1313.855 kb on - strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.094 kb on + strand, within ABZR87_RS06160at 1314.095 kb on - strand, within ABZR87_RS06160at 1314.095 kb on - strand, within ABZR87_RS06160at 1314.268 kb on + strand, within ABZR87_RS06160at 1314.527 kb on + strandat 1314.528 kb on - strandat 1314.528 kb on - strandat 1314.528 kb on - strandat 1314.529 kb on + strandat 1314.529 kb on + strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.530 kb on - strandat 1314.954 kb on + strand, within ABZR87_RS06165at 1314.954 kb on + strand, within ABZR87_RS06165at 1314.954 kb on + strand, within ABZR87_RS06165at 1314.955 kb on - strand, within ABZR87_RS06165at 1314.955 kb on - strand, within ABZR87_RS06165at 1314.955 kb on - strand, within ABZR87_RS06165at 1314.955 kb on - strand, within ABZR87_RS06165at 1315.436 kb on + strand, within ABZR87_RS06170at 1315.437 kb on - strand, within ABZR87_RS06170at 1315.437 kb on - strand, within ABZR87_RS06170at 1315.464 kb on + strand, within ABZR87_RS06170at 1315.465 kb on - strand, within ABZR87_RS06170

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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1,312,513 + ABZR87_RS06155 0.48 +2.0
1,312,513 + ABZR87_RS06155 0.48 +2.2
1,312,513 + ABZR87_RS06155 0.48 +2.5
1,312,513 + ABZR87_RS06155 0.48 +2.3
1,312,514 - ABZR87_RS06155 0.48 +2.1
1,312,808 - ABZR87_RS06155 0.68 +2.5
1,312,808 - ABZR87_RS06155 0.68 +2.4
1,312,971 + ABZR87_RS06155 0.79 +2.7
1,312,972 - ABZR87_RS06155 0.79 +2.1
1,313,029 - ABZR87_RS06155 0.83 +3.1
1,313,098 + ABZR87_RS06155 0.88 +2.3
1,313,099 - ABZR87_RS06155 0.88 +1.9
1,313,099 - ABZR87_RS06155 0.88 +2.4
1,313,104 + ABZR87_RS06155 0.88 +1.2
1,313,105 - ABZR87_RS06155 0.88 +1.6
1,313,105 - ABZR87_RS06155 0.88 +1.2
1,313,105 - ABZR87_RS06155 0.88 +2.2
1,313,180 + +2.7
1,313,181 - +2.8
1,313,357 + +3.4
1,313,358 - -0.9
1,313,419 + +1.1
1,313,419 + +0.5
1,313,420 - -0.6
1,313,420 - -0.7
1,313,420 - -0.3
1,313,420 - -2.1
1,313,420 - -1.6
1,313,420 - -1.4
1,313,534 - +0.2
1,313,728 + ABZR87_RS06160 0.24 -0.4
1,313,728 + ABZR87_RS06160 0.24 +0.6
1,313,728 + ABZR87_RS06160 0.24 +0.2
1,313,729 - ABZR87_RS06160 0.24 -0.1
1,313,729 - ABZR87_RS06160 0.24 +0.7
1,313,761 + ABZR87_RS06160 0.28 -0.8
1,313,761 + ABZR87_RS06160 0.28 -0.2
1,313,761 + ABZR87_RS06160 0.28 +0.8
1,313,762 - ABZR87_RS06160 0.28 -1.1
1,313,762 - ABZR87_RS06160 0.28 -1.7
1,313,762 - ABZR87_RS06160 0.28 -2.4
1,313,762 - ABZR87_RS06160 0.28 +0.0
1,313,803 + ABZR87_RS06160 0.32 -0.2
1,313,803 + ABZR87_RS06160 0.32 +0.1
1,313,804 - ABZR87_RS06160 0.32 +0.0
1,313,854 + ABZR87_RS06160 0.37 -0.3
1,313,854 + ABZR87_RS06160 0.37 -0.1
1,313,854 + ABZR87_RS06160 0.37 +0.1
1,313,854 + ABZR87_RS06160 0.37 +0.1
1,313,855 - ABZR87_RS06160 0.37 +1.0
1,313,855 - ABZR87_RS06160 0.37 -0.1
1,313,855 - ABZR87_RS06160 0.37 -0.5
1,313,855 - ABZR87_RS06160 0.37 -0.1
1,313,855 - ABZR87_RS06160 0.37 +0.2
1,313,855 - ABZR87_RS06160 0.37 -1.8
1,313,855 - ABZR87_RS06160 0.37 -0.3
1,313,855 - ABZR87_RS06160 0.37 +0.2
1,313,855 - ABZR87_RS06160 0.37 -1.0
1,313,855 - ABZR87_RS06160 0.37 -0.6
1,314,094 + ABZR87_RS06160 0.61 +0.2
1,314,094 + ABZR87_RS06160 0.61 -0.1
1,314,094 + ABZR87_RS06160 0.61 -0.2
1,314,094 + ABZR87_RS06160 0.61 -0.3
1,314,095 - ABZR87_RS06160 0.61 +0.3
1,314,095 - ABZR87_RS06160 0.61 -0.7
1,314,268 + ABZR87_RS06160 0.79 +0.5
1,314,527 + -0.1
1,314,528 - -1.5
1,314,528 - -0.6
1,314,528 - +0.6
1,314,529 + +0.0
1,314,529 + -0.9
1,314,530 - -2.0
1,314,530 - -0.4
1,314,530 - +0.0
1,314,530 - +0.5
1,314,530 - -1.3
1,314,530 - -1.2
1,314,530 - -0.5
1,314,954 + ABZR87_RS06165 0.69 +2.2
1,314,954 + ABZR87_RS06165 0.69 +0.4
1,314,954 + ABZR87_RS06165 0.69 +0.0
1,314,955 - ABZR87_RS06165 0.69 +0.3
1,314,955 - ABZR87_RS06165 0.69 -0.0
1,314,955 - ABZR87_RS06165 0.69 +0.2
1,314,955 - ABZR87_RS06165 0.69 -1.0
1,315,436 + ABZR87_RS06170 0.19 -0.6
1,315,437 - ABZR87_RS06170 0.19 +0.1
1,315,437 - ABZR87_RS06170 0.19 -1.3
1,315,464 + ABZR87_RS06170 0.22 -2.4
1,315,465 - ABZR87_RS06170 0.22 -0.1

Or see this region's nucleotide sequence