Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05360

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05350 and ABZR87_RS05355 are separated by 59 nucleotidesABZR87_RS05355 and ABZR87_RS05360 are separated by 73 nucleotidesABZR87_RS05360 and ABZR87_RS05365 are separated by 6 nucleotidesABZR87_RS05365 and ABZR87_RS05370 overlap by 4 nucleotidesABZR87_RS05370 and ABZR87_RS05375 are separated by 62 nucleotides ABZR87_RS05350: ABZR87_RS05350 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 1,126,431 to 1,127,876 _RS05350 ABZR87_RS05355: ABZR87_RS05355 - VOC family protein, at 1,127,936 to 1,128,334 _RS05355 ABZR87_RS05360: ABZR87_RS05360 - membrane protein insertase YidC, at 1,128,408 to 1,130,072 _RS05360 ABZR87_RS05365: ABZR87_RS05365 - membrane protein insertion efficiency factor YidD, at 1,130,079 to 1,130,393 _RS05365 ABZR87_RS05370: ABZR87_RS05370 - ribonuclease P protein component, at 1,130,390 to 1,130,812 _RS05370 ABZR87_RS05375: ABZR87_RS05375 - 50S ribosomal protein L34, at 1,130,875 to 1,131,009 _RS05375 Position (kb) 1128 1129 1130 1131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1127.583 kb on + strand, within ABZR87_RS05350at 1127.583 kb on + strand, within ABZR87_RS05350at 1127.583 kb on + strand, within ABZR87_RS05350at 1127.584 kb on - strand, within ABZR87_RS05350at 1127.584 kb on - strand, within ABZR87_RS05350at 1127.602 kb on + strand, within ABZR87_RS05350at 1127.602 kb on + strand, within ABZR87_RS05350at 1127.603 kb on - strand, within ABZR87_RS05350at 1127.603 kb on - strand, within ABZR87_RS05350at 1127.673 kb on + strand, within ABZR87_RS05350at 1127.673 kb on + strand, within ABZR87_RS05350at 1127.674 kb on - strand, within ABZR87_RS05350at 1127.674 kb on - strand, within ABZR87_RS05350at 1127.677 kb on + strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.678 kb on - strand, within ABZR87_RS05350at 1127.883 kb on + strandat 1127.884 kb on - strandat 1127.884 kb on - strandat 1127.884 kb on - strandat 1127.990 kb on + strand, within ABZR87_RS05355at 1127.991 kb on - strand, within ABZR87_RS05355at 1127.991 kb on - strand, within ABZR87_RS05355at 1128.169 kb on + strand, within ABZR87_RS05355at 1128.170 kb on - strand, within ABZR87_RS05355at 1128.194 kb on + strand, within ABZR87_RS05355at 1128.194 kb on + strand, within ABZR87_RS05355at 1128.194 kb on + strand, within ABZR87_RS05355at 1128.195 kb on - strand, within ABZR87_RS05355at 1128.195 kb on - strand, within ABZR87_RS05355at 1128.254 kb on + strand, within ABZR87_RS05355at 1128.254 kb on + strand, within ABZR87_RS05355at 1128.255 kb on - strand, within ABZR87_RS05355at 1128.255 kb on - strand, within ABZR87_RS05355at 1128.255 kb on - strand, within ABZR87_RS05355at 1128.266 kb on + strand, within ABZR87_RS05355at 1128.267 kb on - strand, within ABZR87_RS05355at 1128.267 kb on - strand, within ABZR87_RS05355at 1128.270 kb on - strand, within ABZR87_RS05355at 1128.270 kb on - strand, within ABZR87_RS05355at 1128.270 kb on - strand, within ABZR87_RS05355at 1128.362 kb on - strandat 1128.362 kb on - strandat 1128.409 kb on + strandat 1128.409 kb on + strandat 1128.410 kb on - strandat 1128.410 kb on - strandat 1128.410 kb on - strandat 1128.410 kb on - strandat 1130.081 kb on - strandat 1130.200 kb on + strand, within ABZR87_RS05365at 1130.200 kb on + strand, within ABZR87_RS05365at 1130.233 kb on - strand, within ABZR87_RS05365at 1130.233 kb on - strand, within ABZR87_RS05365at 1130.233 kb on - strand, within ABZR87_RS05365at 1130.251 kb on + strand, within ABZR87_RS05365at 1130.251 kb on + strand, within ABZR87_RS05365at 1130.251 kb on + strand, within ABZR87_RS05365at 1130.252 kb on - strand, within ABZR87_RS05365at 1130.252 kb on - strand, within ABZR87_RS05365at 1130.252 kb on - strand, within ABZR87_RS05365at 1130.359 kb on + strand, within ABZR87_RS05365at 1130.359 kb on + strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.360 kb on - strand, within ABZR87_RS05365at 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strandat 1130.876 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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1,127,583 + ABZR87_RS05350 0.80 -2.7
1,127,583 + ABZR87_RS05350 0.80 -1.0
1,127,583 + ABZR87_RS05350 0.80 -2.2
1,127,584 - ABZR87_RS05350 0.80 +0.2
1,127,584 - ABZR87_RS05350 0.80 +0.2
1,127,602 + ABZR87_RS05350 0.81 +1.7
1,127,602 + ABZR87_RS05350 0.81 -3.8
1,127,603 - ABZR87_RS05350 0.81 +0.2
1,127,603 - ABZR87_RS05350 0.81 -2.3
1,127,673 + ABZR87_RS05350 0.86 -3.4
1,127,673 + ABZR87_RS05350 0.86 -2.8
1,127,674 - ABZR87_RS05350 0.86 -0.8
1,127,674 - ABZR87_RS05350 0.86 -1.6
1,127,677 + ABZR87_RS05350 0.86 -3.5
1,127,678 - ABZR87_RS05350 0.86 -0.6
1,127,678 - ABZR87_RS05350 0.86 -0.3
1,127,678 - ABZR87_RS05350 0.86 -1.6
1,127,678 - ABZR87_RS05350 0.86 -2.2
1,127,678 - ABZR87_RS05350 0.86 -2.2
1,127,678 - ABZR87_RS05350 0.86 -2.7
1,127,678 - ABZR87_RS05350 0.86 -0.6
1,127,883 + +0.5
1,127,884 - -0.0
1,127,884 - +0.7
1,127,884 - -1.0
1,127,990 + ABZR87_RS05355 0.14 -0.5
1,127,991 - ABZR87_RS05355 0.14 -1.0
1,127,991 - ABZR87_RS05355 0.14 -1.2
1,128,169 + ABZR87_RS05355 0.58 +0.1
1,128,170 - ABZR87_RS05355 0.59 -1.4
1,128,194 + ABZR87_RS05355 0.65 +0.9
1,128,194 + ABZR87_RS05355 0.65 +0.2
1,128,194 + ABZR87_RS05355 0.65 +1.2
1,128,195 - ABZR87_RS05355 0.65 +0.7
1,128,195 - ABZR87_RS05355 0.65 -0.4
1,128,254 + ABZR87_RS05355 0.80 -0.6
1,128,254 + ABZR87_RS05355 0.80 +0.5
1,128,255 - ABZR87_RS05355 0.80 -0.3
1,128,255 - ABZR87_RS05355 0.80 +0.6
1,128,255 - ABZR87_RS05355 0.80 +0.2
1,128,266 + ABZR87_RS05355 0.83 +1.2
1,128,267 - ABZR87_RS05355 0.83 +0.4
1,128,267 - ABZR87_RS05355 0.83 +0.1
1,128,270 - ABZR87_RS05355 0.84 -0.1
1,128,270 - ABZR87_RS05355 0.84 -0.1
1,128,270 - ABZR87_RS05355 0.84 -0.4
1,128,362 - -0.5
1,128,362 - -0.7
1,128,409 + +0.1
1,128,409 + +0.3
1,128,410 - +0.6
1,128,410 - +0.0
1,128,410 - -1.0
1,128,410 - +0.6
1,130,081 - +0.1
1,130,200 + ABZR87_RS05365 0.38 +0.6
1,130,200 + ABZR87_RS05365 0.38 +1.0
1,130,233 - ABZR87_RS05365 0.49 +0.4
1,130,233 - ABZR87_RS05365 0.49 -1.6
1,130,233 - ABZR87_RS05365 0.49 +0.0
1,130,251 + ABZR87_RS05365 0.55 -2.7
1,130,251 + ABZR87_RS05365 0.55 -1.5
1,130,251 + ABZR87_RS05365 0.55 +0.5
1,130,252 - ABZR87_RS05365 0.55 +0.4
1,130,252 - ABZR87_RS05365 0.55 -0.2
1,130,252 - ABZR87_RS05365 0.55 -0.3
1,130,359 + ABZR87_RS05365 0.89 -0.4
1,130,359 + ABZR87_RS05365 0.89 -0.2
1,130,360 - ABZR87_RS05365 0.89 +0.5
1,130,360 - ABZR87_RS05365 0.89 -2.1
1,130,360 - ABZR87_RS05365 0.89 -0.8
1,130,360 - ABZR87_RS05365 0.89 +0.1
1,130,360 - ABZR87_RS05365 0.89 -0.3
1,130,360 - ABZR87_RS05365 0.89 +0.4
1,130,876 + -1.1
1,130,876 + +0.4
1,130,876 + -0.2
1,130,876 + -1.9
1,130,876 + -1.3

Or see this region's nucleotide sequence