Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05095 and ABZR87_RS05100 are separated by 421 nucleotides ABZR87_RS05100 and ABZR87_RS05105 are separated by 99 nucleotides
ABZR87_RS05095: ABZR87_RS05095 - GTP-binding protein, at 1,073,282 to 1,074,367
_RS05095
ABZR87_RS05100: ABZR87_RS05100 - RNA polymerase-binding protein DksA, at 1,074,789 to 1,075,208
_RS05100
ABZR87_RS05105: ABZR87_RS05105 - zinc metallochaperone GTPase ZigA, at 1,075,308 to 1,076,612
_RS05105
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1074.070 kb on + strand, within ABZR87_RS05095 at 1074.071 kb on - strand, within ABZR87_RS05095 at 1074.119 kb on + strand, within ABZR87_RS05095 at 1074.119 kb on + strand, within ABZR87_RS05095 at 1074.119 kb on + strand, within ABZR87_RS05095 at 1074.119 kb on + strand, within ABZR87_RS05095 at 1074.119 kb on + strand, within ABZR87_RS05095 at 1074.120 kb on - strand, within ABZR87_RS05095 at 1074.120 kb on - strand, within ABZR87_RS05095 at 1074.120 kb on - strand, within ABZR87_RS05095 at 1074.120 kb on - strand, within ABZR87_RS05095 at 1074.161 kb on + strand, within ABZR87_RS05095 at 1074.161 kb on + strand, within ABZR87_RS05095 at 1074.161 kb on + strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.162 kb on - strand, within ABZR87_RS05095 at 1074.182 kb on + strand, within ABZR87_RS05095 at 1074.182 kb on + strand, within ABZR87_RS05095 at 1074.183 kb on - strand, within ABZR87_RS05095 at 1074.183 kb on - strand, within ABZR87_RS05095 at 1074.183 kb on - strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.197 kb on + strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.198 kb on - strand, within ABZR87_RS05095 at 1074.225 kb on + strand, within ABZR87_RS05095 at 1074.225 kb on + strand, within ABZR87_RS05095 at 1074.225 kb on + strand, within ABZR87_RS05095 at 1074.226 kb on - strand, within ABZR87_RS05095 at 1074.226 kb on - strand, within ABZR87_RS05095 at 1074.380 kb on + strand at 1074.380 kb on + strand at 1074.380 kb on + strand at 1074.380 kb on + strand at 1074.381 kb on - strand at 1074.381 kb on - strand at 1074.381 kb on - strand at 1074.456 kb on + strand at 1074.457 kb on - strand at 1074.465 kb on + strand at 1074.479 kb on + strand at 1074.479 kb on + strand at 1074.479 kb on + strand at 1074.480 kb on - strand at 1074.480 kb on - strand at 1074.484 kb on + strand at 1074.484 kb on + strand at 1074.484 kb on + strand at 1074.484 kb on + strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.485 kb on - strand at 1074.494 kb on + strand at 1074.494 kb on + strand at 1074.494 kb on + strand at 1074.494 kb on + strand at 1074.494 kb on + strand at 1074.523 kb on + strand at 1074.524 kb on - strand at 1074.545 kb on + strand at 1074.545 kb on + strand at 1074.546 kb on - strand at 1074.766 kb on + strand at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.846 kb on + strand, within ABZR87_RS05100 at 1074.847 kb on - strand, within ABZR87_RS05100 at 1074.847 kb on - strand, within ABZR87_RS05100 at 1074.847 kb on - strand, within ABZR87_RS05100 at 1074.847 kb on - strand, within ABZR87_RS05100 at 1075.084 kb on - strand, within ABZR87_RS05100 at 1075.084 kb on - strand, within ABZR87_RS05100 at 1075.257 kb on + strand at 1075.602 kb on + strand, within ABZR87_RS05105 at 1075.602 kb on + strand, within ABZR87_RS05105 at 1075.656 kb on + strand, within ABZR87_RS05105 at 1075.659 kb on - strand, within ABZR87_RS05105 at 1075.659 kb on - strand, within ABZR87_RS05105 at 1075.991 kb on + strand, within ABZR87_RS05105 at 1075.992 kb on - strand, within ABZR87_RS05105 at 1075.992 kb on - strand, within ABZR87_RS05105 at 1075.992 kb on - strand, within ABZR87_RS05105 at 1075.992 kb on - strand, within ABZR87_RS05105 at 1075.992 kb on - strand, within ABZR87_RS05105 at 1076.196 kb on + strand, within ABZR87_RS05105 at 1076.196 kb on + strand, within ABZR87_RS05105
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,074,070 + ABZR87_RS05095 0.73 +0.6 1,074,071 - ABZR87_RS05095 0.73 -0.6 1,074,119 + ABZR87_RS05095 0.77 +0.6 1,074,119 + ABZR87_RS05095 0.77 -0.2 1,074,119 + ABZR87_RS05095 0.77 +0.6 1,074,119 + ABZR87_RS05095 0.77 +0.3 1,074,119 + ABZR87_RS05095 0.77 +0.7 1,074,120 - ABZR87_RS05095 0.77 -0.3 1,074,120 - ABZR87_RS05095 0.77 +1.0 1,074,120 - ABZR87_RS05095 0.77 -0.4 1,074,120 - ABZR87_RS05095 0.77 -1.4 1,074,161 + ABZR87_RS05095 0.81 -1.5 1,074,161 + ABZR87_RS05095 0.81 +0.6 1,074,161 + ABZR87_RS05095 0.81 +0.1 1,074,162 - ABZR87_RS05095 0.81 +0.1 1,074,162 - ABZR87_RS05095 0.81 +0.3 1,074,162 - ABZR87_RS05095 0.81 +0.2 1,074,162 - ABZR87_RS05095 0.81 -0.0 1,074,162 - ABZR87_RS05095 0.81 -0.4 1,074,162 - ABZR87_RS05095 0.81 +0.3 1,074,162 - ABZR87_RS05095 0.81 +0.2 1,074,162 - ABZR87_RS05095 0.81 +0.7 1,074,182 + ABZR87_RS05095 0.83 -0.5 1,074,182 + ABZR87_RS05095 0.83 +1.2 1,074,183 - ABZR87_RS05095 0.83 -0.1 1,074,183 - ABZR87_RS05095 0.83 -0.2 1,074,183 - ABZR87_RS05095 0.83 +1.0 1,074,197 + ABZR87_RS05095 0.84 +2.0 1,074,197 + ABZR87_RS05095 0.84 +0.2 1,074,197 + ABZR87_RS05095 0.84 +0.6 1,074,197 + ABZR87_RS05095 0.84 -1.0 1,074,197 + ABZR87_RS05095 0.84 -2.0 1,074,197 + ABZR87_RS05095 0.84 -0.3 1,074,198 - ABZR87_RS05095 0.84 -0.2 1,074,198 - ABZR87_RS05095 0.84 -0.2 1,074,198 - ABZR87_RS05095 0.84 +0.6 1,074,198 - ABZR87_RS05095 0.84 +0.4 1,074,198 - ABZR87_RS05095 0.84 +0.1 1,074,198 - ABZR87_RS05095 0.84 -1.8 1,074,198 - ABZR87_RS05095 0.84 -0.9 1,074,198 - ABZR87_RS05095 0.84 +0.3 1,074,198 - ABZR87_RS05095 0.84 +0.9 1,074,198 - ABZR87_RS05095 0.84 -0.2 1,074,198 - ABZR87_RS05095 0.84 +0.0 1,074,225 + ABZR87_RS05095 0.87 -0.4 1,074,225 + ABZR87_RS05095 0.87 -0.4 1,074,225 + ABZR87_RS05095 0.87 -1.5 1,074,226 - ABZR87_RS05095 0.87 +0.5 1,074,226 - ABZR87_RS05095 0.87 -1.3 1,074,380 + +0.4 1,074,380 + -0.7 1,074,380 + +0.8 1,074,380 + -2.0 1,074,381 - -0.5 1,074,381 - -0.6 1,074,381 - +1.1 1,074,456 + -0.6 1,074,457 - -0.5 1,074,465 + +0.3 1,074,479 + +0.7 1,074,479 + +0.9 1,074,479 + +1.0 1,074,480 - +0.1 1,074,480 - -0.4 1,074,484 + +0.1 1,074,484 + +0.0 1,074,484 + -1.7 1,074,484 + -0.4 1,074,485 - -0.5 1,074,485 - -0.4 1,074,485 - -0.5 1,074,485 - -0.3 1,074,485 - -0.6 1,074,485 - +0.3 1,074,485 - +1.0 1,074,485 - -0.3 1,074,494 + +0.8 1,074,494 + -0.8 1,074,494 + +1.7 1,074,494 + +0.4 1,074,494 + -1.2 1,074,523 + -0.3 1,074,524 - +0.3 1,074,545 + -0.1 1,074,545 + +0.3 1,074,546 - +0.1 1,074,766 + -0.3 1,074,846 + ABZR87_RS05100 0.14 +0.1 1,074,846 + ABZR87_RS05100 0.14 +1.7 1,074,846 + ABZR87_RS05100 0.14 -1.0 1,074,846 + ABZR87_RS05100 0.14 -1.1 1,074,846 + ABZR87_RS05100 0.14 -1.9 1,074,846 + ABZR87_RS05100 0.14 -2.7 1,074,846 + ABZR87_RS05100 0.14 -0.6 1,074,847 - ABZR87_RS05100 0.14 -0.6 1,074,847 - ABZR87_RS05100 0.14 -2.7 1,074,847 - ABZR87_RS05100 0.14 -2.2 1,074,847 - ABZR87_RS05100 0.14 -2.2 1,075,084 - ABZR87_RS05100 0.70 -2.4 1,075,084 - ABZR87_RS05100 0.70 -1.6 1,075,257 + +0.9 1,075,602 + ABZR87_RS05105 0.23 +0.1 1,075,602 + ABZR87_RS05105 0.23 -0.0 1,075,656 + ABZR87_RS05105 0.27 +0.5 1,075,659 - ABZR87_RS05105 0.27 +0.4 1,075,659 - ABZR87_RS05105 0.27 +0.3 1,075,991 + ABZR87_RS05105 0.52 +0.6 1,075,992 - ABZR87_RS05105 0.52 -0.3 1,075,992 - ABZR87_RS05105 0.52 +0.5 1,075,992 - ABZR87_RS05105 0.52 +0.4 1,075,992 - ABZR87_RS05105 0.52 -0.2 1,075,992 - ABZR87_RS05105 0.52 +0.2 1,076,196 + ABZR87_RS05105 0.68 +0.7 1,076,196 + ABZR87_RS05105 0.68 +0.2
Or see this region's nucleotide sequence