Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05015 and ABZR87_RS05020 are separated by 42 nucleotides ABZR87_RS05020 and ABZR87_RS05025 are separated by 16 nucleotides ABZR87_RS05025 and ABZR87_RS05030 are separated by 239 nucleotides
ABZR87_RS05015: ABZR87_RS05015 - penicillin-binding protein 2, at 1,055,510 to 1,057,912
_RS05015
ABZR87_RS05020: ABZR87_RS05020 - rod shape-determining protein MreD, at 1,057,955 to 1,058,467
_RS05020
ABZR87_RS05025: ABZR87_RS05025 - rod shape-determining protein MreC, at 1,058,484 to 1,059,530
_RS05025
ABZR87_RS05030: ABZR87_RS05030 - rod shape-determining protein, at 1,059,770 to 1,060,813
_RS05030
Position (kb)
1058
1059
1060 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1057.666 kb on - strand, within ABZR87_RS05015 at 1057.675 kb on - strand at 1057.675 kb on - strand at 1057.675 kb on - strand at 1057.773 kb on + strand at 1057.774 kb on - strand at 1057.930 kb on - strand at 1057.956 kb on + strand at 1057.957 kb on - strand at 1057.957 kb on - strand at 1058.205 kb on + strand, within ABZR87_RS05020 at 1058.221 kb on - strand, within ABZR87_RS05020 at 1058.451 kb on + strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1058.452 kb on - strand at 1059.125 kb on + strand, within ABZR87_RS05025 at 1059.125 kb on + strand, within ABZR87_RS05025 at 1059.128 kb on - strand, within ABZR87_RS05025 at 1059.128 kb on - strand, within ABZR87_RS05025 at 1059.146 kb on - strand, within ABZR87_RS05025 at 1059.146 kb on - strand, within ABZR87_RS05025 at 1059.203 kb on + strand, within ABZR87_RS05025 at 1059.323 kb on - strand, within ABZR87_RS05025 at 1059.772 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 1,057,666 - ABZR87_RS05015 0.90 -0.9 1,057,675 - +1.7 1,057,675 - +1.3 1,057,675 - -1.8 1,057,773 + -1.6 1,057,774 - +0.7 1,057,930 - +0.2 1,057,956 + -0.9 1,057,957 - -0.1 1,057,957 - +1.0 1,058,205 + ABZR87_RS05020 0.49 -0.9 1,058,221 - ABZR87_RS05020 0.52 +2.7 1,058,451 + +2.7 1,058,452 - +0.2 1,058,452 - +0.7 1,058,452 - +0.5 1,058,452 - -2.2 1,058,452 - -1.1 1,059,125 + ABZR87_RS05025 0.61 -1.4 1,059,125 + ABZR87_RS05025 0.61 +0.1 1,059,128 - ABZR87_RS05025 0.62 -1.1 1,059,128 - ABZR87_RS05025 0.62 +1.3 1,059,146 - ABZR87_RS05025 0.63 -0.6 1,059,146 - ABZR87_RS05025 0.63 -1.1 1,059,203 + ABZR87_RS05025 0.69 +0.7 1,059,323 - ABZR87_RS05025 0.80 +0.1 1,059,772 - -0.7
Or see this region's nucleotide sequence