Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04690 and ABZR87_RS04695 are separated by 71 nucleotides ABZR87_RS04695 and ABZR87_RS04700 are separated by 73 nucleotides ABZR87_RS04700 and ABZR87_RS04705 overlap by 4 nucleotides ABZR87_RS04705 and ABZR87_RS04710 are separated by 2 nucleotides
ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327
_RS04690
ABZR87_RS04695: ABZR87_RS04695 - hypothetical protein, at 980,399 to 980,788
_RS04695
ABZR87_RS04700: ABZR87_RS04700 - FAD-binding oxidoreductase, at 980,862 to 982,181
_RS04700
ABZR87_RS04705: ABZR87_RS04705 - amino acid ABC transporter ATP-binding protein, at 982,178 to 982,939
_RS04705
ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613
_RS04710
Position (kb) 980
981
982
983 Strain fitness (log2 ratio) -1
0
1 at 979.920 kb on + strand, within ABZR87_RS04690 at 979.921 kb on - strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.151 kb on + strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.152 kb on - strand, within ABZR87_RS04690 at 980.199 kb on + strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.200 kb on - strand, within ABZR87_RS04690 at 980.400 kb on + strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.401 kb on - strand at 980.443 kb on + strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.444 kb on - strand, within ABZR87_RS04695 at 980.712 kb on + strand, within ABZR87_RS04695 at 980.713 kb on - strand, within ABZR87_RS04695 at 980.827 kb on - strand at 980.890 kb on + strand at 980.890 kb on + strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.891 kb on - strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.914 kb on + strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 980.915 kb on - strand at 981.137 kb on - strand, within ABZR87_RS04700 at 981.137 kb on - strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700 at 981.277 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.368 kb on + strand, within ABZR87_RS04700 at 981.369 kb on - strand, within ABZR87_RS04700 at 981.369 kb on - strand, within ABZR87_RS04700 at 981.424 kb on + strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.425 kb on - strand, within ABZR87_RS04700 at 981.751 kb on + strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.752 kb on - strand, within ABZR87_RS04700 at 981.822 kb on + strand, within ABZR87_RS04700 at 981.822 kb on + strand, within ABZR87_RS04700 at 981.823 kb on - strand, within ABZR87_RS04700 at 981.823 kb on - strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.030 kb on + strand, within ABZR87_RS04700 at 982.031 kb on - strand, within ABZR87_RS04700 at 982.031 kb on - strand, within ABZR87_RS04700 at 982.542 kb on + strand, within ABZR87_RS04705 at 982.543 kb on - strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.629 kb on + strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.630 kb on - strand, within ABZR87_RS04705 at 982.782 kb on + strand, within ABZR87_RS04705 at 982.782 kb on + strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 982.783 kb on - strand, within ABZR87_RS04705 at 983.021 kb on + strand, within ABZR87_RS04710 at 983.021 kb on + strand, within ABZR87_RS04710 at 983.022 kb on - strand, within ABZR87_RS04710 at 983.022 kb on - strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.042 kb on + strand, within ABZR87_RS04710 at 983.043 kb on - strand, within ABZR87_RS04710 at 983.162 kb on + strand, within ABZR87_RS04710 at 983.163 kb on - strand, within ABZR87_RS04710
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 979,920 + ABZR87_RS04690 0.53 +0.1 979,921 - ABZR87_RS04690 0.53 +0.3 980,151 + ABZR87_RS04690 0.80 +0.6 980,151 + ABZR87_RS04690 0.80 +0.8 980,151 + ABZR87_RS04690 0.80 +0.1 980,152 - ABZR87_RS04690 0.80 -0.1 980,152 - ABZR87_RS04690 0.80 +1.2 980,199 + ABZR87_RS04690 0.85 -0.2 980,200 - ABZR87_RS04690 0.85 +0.4 980,200 - ABZR87_RS04690 0.85 +1.0 980,400 + -0.5 980,401 - -0.8 980,401 - -0.3 980,401 - +0.7 980,443 + ABZR87_RS04695 0.11 +0.8 980,444 - ABZR87_RS04695 0.12 +0.5 980,444 - ABZR87_RS04695 0.12 +0.1 980,712 + ABZR87_RS04695 0.80 -0.5 980,713 - ABZR87_RS04695 0.81 -0.4 980,827 - +0.5 980,890 + +0.0 980,890 + +1.7 980,891 - +0.1 980,891 - +0.8 980,891 - -0.0 980,891 - -1.0 980,891 - -0.6 980,914 + +0.2 980,914 + -0.4 980,914 + -0.3 980,914 + -1.1 980,914 + +0.6 980,914 + +0.1 980,914 + +0.9 980,915 - -0.2 980,915 - -0.8 980,915 - +0.3 980,915 - -1.2 980,915 - -1.2 980,915 - -0.5 981,137 - ABZR87_RS04700 0.21 +0.1 981,137 - ABZR87_RS04700 0.21 -1.1 981,277 + ABZR87_RS04700 0.31 +1.5 981,277 + ABZR87_RS04700 0.31 -0.7 981,368 + ABZR87_RS04700 0.38 +0.1 981,368 + ABZR87_RS04700 0.38 -0.1 981,368 + ABZR87_RS04700 0.38 +0.5 981,369 - ABZR87_RS04700 0.38 +1.3 981,369 - ABZR87_RS04700 0.38 +0.6 981,424 + ABZR87_RS04700 0.43 -0.2 981,425 - ABZR87_RS04700 0.43 +0.5 981,425 - ABZR87_RS04700 0.43 -0.4 981,425 - ABZR87_RS04700 0.43 +1.4 981,751 + ABZR87_RS04700 0.67 -0.2 981,752 - ABZR87_RS04700 0.67 +0.3 981,752 - ABZR87_RS04700 0.67 -0.3 981,752 - ABZR87_RS04700 0.67 +0.9 981,822 + ABZR87_RS04700 0.73 +1.1 981,822 + ABZR87_RS04700 0.73 +0.8 981,823 - ABZR87_RS04700 0.73 +0.1 981,823 - ABZR87_RS04700 0.73 +0.9 982,030 + ABZR87_RS04700 0.88 -0.0 982,030 + ABZR87_RS04700 0.88 +1.1 982,030 + ABZR87_RS04700 0.88 -0.1 982,031 - ABZR87_RS04700 0.89 -0.2 982,031 - ABZR87_RS04700 0.89 +0.1 982,542 + ABZR87_RS04705 0.48 +0.4 982,543 - ABZR87_RS04705 0.48 -0.2 982,629 + ABZR87_RS04705 0.59 -1.0 982,629 + ABZR87_RS04705 0.59 +0.1 982,629 + ABZR87_RS04705 0.59 +0.4 982,630 - ABZR87_RS04705 0.59 -0.0 982,630 - ABZR87_RS04705 0.59 -0.5 982,630 - ABZR87_RS04705 0.59 +0.7 982,630 - ABZR87_RS04705 0.59 -1.0 982,630 - ABZR87_RS04705 0.59 -0.9 982,782 + ABZR87_RS04705 0.79 -0.3 982,782 + ABZR87_RS04705 0.79 -0.2 982,783 - ABZR87_RS04705 0.79 -1.3 982,783 - ABZR87_RS04705 0.79 +0.9 982,783 - ABZR87_RS04705 0.79 -0.3 982,783 - ABZR87_RS04705 0.79 +0.6 982,783 - ABZR87_RS04705 0.79 +0.2 982,783 - ABZR87_RS04705 0.79 -1.3 983,021 + ABZR87_RS04710 0.12 -0.2 983,021 + ABZR87_RS04710 0.12 -0.5 983,022 - ABZR87_RS04710 0.12 +0.2 983,022 - ABZR87_RS04710 0.12 -0.7 983,042 + ABZR87_RS04710 0.15 -0.8 983,042 + ABZR87_RS04710 0.15 +0.1 983,042 + ABZR87_RS04710 0.15 -0.0 983,043 - ABZR87_RS04710 0.15 -0.8 983,162 + ABZR87_RS04710 0.33 -1.0 983,163 - ABZR87_RS04710 0.33 +0.8
Or see this region's nucleotide sequence