Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04305

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04300 and ABZR87_RS04305 are separated by 112 nucleotidesABZR87_RS04305 and ABZR87_RS04310 are separated by 16 nucleotides ABZR87_RS04300: ABZR87_RS04300 - DUF2272 domain-containing protein, at 896,380 to 897,327 _RS04300 ABZR87_RS04305: ABZR87_RS04305 - class II aldolase/adducin family protein, at 897,440 to 898,264 _RS04305 ABZR87_RS04310: ABZR87_RS04310 - 2-dehydropantoate 2-reductase, at 898,281 to 899,258 _RS04310 Position (kb) 897 898 899Strain fitness (log2 ratio) -2 -1 0 1 2at 896.625 kb on + strand, within ABZR87_RS04300at 896.625 kb on + strand, within ABZR87_RS04300at 896.625 kb on + strand, within ABZR87_RS04300at 896.626 kb on - strand, within ABZR87_RS04300at 896.626 kb on - strand, within ABZR87_RS04300at 896.626 kb on - strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.629 kb on + strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.630 kb on - strand, within ABZR87_RS04300at 896.765 kb on + strand, within ABZR87_RS04300at 896.766 kb on - strand, within ABZR87_RS04300at 896.849 kb on - strand, within ABZR87_RS04300at 896.849 kb on - strand, within ABZR87_RS04300at 896.992 kb on + strand, within ABZR87_RS04300at 896.992 kb on + strand, within ABZR87_RS04300at 896.992 kb on + strand, within ABZR87_RS04300at 896.993 kb on - strand, within ABZR87_RS04300at 897.085 kb on - strand, within ABZR87_RS04300at 897.085 kb on - strand, within ABZR87_RS04300at 897.085 kb on - strand, within ABZR87_RS04300at 897.085 kb on - strand, within ABZR87_RS04300at 897.275 kb on - strandat 897.275 kb on - strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.302 kb on + strandat 897.303 kb on - strandat 897.303 kb on - strandat 897.325 kb on + strandat 897.326 kb on - strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.341 kb on + strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.342 kb on - strandat 897.549 kb on - strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.587 kb on + strand, within ABZR87_RS04305at 897.588 kb on - strand, within ABZR87_RS04305at 897.588 kb on - strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.677 kb on + strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.678 kb on - strand, within ABZR87_RS04305at 897.679 kb on + strand, within ABZR87_RS04305at 897.680 kb on - strand, within ABZR87_RS04305at 897.706 kb on - strand, within ABZR87_RS04305at 897.926 kb on + strand, within ABZR87_RS04305at 897.927 kb on - strand, within ABZR87_RS04305at 897.947 kb on - strand, within ABZR87_RS04305at 897.947 kb on - strand, within ABZR87_RS04305at 898.253 kb on + strandat 898.254 kb on - strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.280 kb on + strandat 898.281 kb on - strandat 898.323 kb on + strandat 898.323 kb on + strandat 898.324 kb on - strandat 898.324 kb on - strandat 898.441 kb on + strand, within ABZR87_RS04310at 898.441 kb on + strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 898.442 kb on - strand, within ABZR87_RS04310at 899.199 kb on + strandat 899.200 kb on - strandat 899.201 kb on + strandat 899.202 kb on - strandat 899.202 kb on - strandat 899.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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896,625 + ABZR87_RS04300 0.26 +0.6
896,625 + ABZR87_RS04300 0.26 +0.7
896,625 + ABZR87_RS04300 0.26 +0.5
896,626 - ABZR87_RS04300 0.26 +0.1
896,626 - ABZR87_RS04300 0.26 -0.2
896,626 - ABZR87_RS04300 0.26 -1.1
896,629 + ABZR87_RS04300 0.26 +0.3
896,629 + ABZR87_RS04300 0.26 +0.6
896,629 + ABZR87_RS04300 0.26 -0.0
896,629 + ABZR87_RS04300 0.26 -0.6
896,629 + ABZR87_RS04300 0.26 +0.8
896,629 + ABZR87_RS04300 0.26 -0.5
896,629 + ABZR87_RS04300 0.26 -0.2
896,629 + ABZR87_RS04300 0.26 -0.1
896,629 + ABZR87_RS04300 0.26 -0.2
896,629 + ABZR87_RS04300 0.26 -0.8
896,629 + ABZR87_RS04300 0.26 +0.6
896,629 + ABZR87_RS04300 0.26 +1.6
896,630 - ABZR87_RS04300 0.26 +0.3
896,630 - ABZR87_RS04300 0.26 -0.7
896,630 - ABZR87_RS04300 0.26 -0.2
896,630 - ABZR87_RS04300 0.26 -1.2
896,630 - ABZR87_RS04300 0.26 -0.2
896,630 - ABZR87_RS04300 0.26 +0.1
896,630 - ABZR87_RS04300 0.26 -0.6
896,630 - ABZR87_RS04300 0.26 -1.2
896,630 - ABZR87_RS04300 0.26 -0.4
896,630 - ABZR87_RS04300 0.26 -0.6
896,630 - ABZR87_RS04300 0.26 -1.7
896,630 - ABZR87_RS04300 0.26 +0.1
896,630 - ABZR87_RS04300 0.26 +0.1
896,630 - ABZR87_RS04300 0.26 +0.0
896,630 - ABZR87_RS04300 0.26 -0.6
896,630 - ABZR87_RS04300 0.26 +0.4
896,630 - ABZR87_RS04300 0.26 -0.2
896,630 - ABZR87_RS04300 0.26 +0.5
896,765 + ABZR87_RS04300 0.41 +0.6
896,766 - ABZR87_RS04300 0.41 -1.4
896,849 - ABZR87_RS04300 0.49 -0.5
896,849 - ABZR87_RS04300 0.49 +0.6
896,992 + ABZR87_RS04300 0.65 +0.4
896,992 + ABZR87_RS04300 0.65 -0.6
896,992 + ABZR87_RS04300 0.65 -1.2
896,993 - ABZR87_RS04300 0.65 -1.6
897,085 - ABZR87_RS04300 0.74 -0.7
897,085 - ABZR87_RS04300 0.74 -0.9
897,085 - ABZR87_RS04300 0.74 -0.5
897,085 - ABZR87_RS04300 0.74 -0.2
897,275 - -1.4
897,275 - -0.9
897,302 + +0.2
897,302 + -0.9
897,302 + -0.8
897,302 + -0.3
897,302 + -0.7
897,302 + -0.0
897,303 - -1.1
897,303 - +1.3
897,325 + +0.2
897,326 - +0.1
897,341 + +0.1
897,341 + +0.2
897,341 + -2.2
897,341 + -0.1
897,341 + -0.5
897,342 - +0.1
897,342 - -1.0
897,342 - -0.4
897,342 - +0.2
897,342 - +0.3
897,549 - ABZR87_RS04305 0.13 +1.2
897,587 + ABZR87_RS04305 0.18 +0.7
897,587 + ABZR87_RS04305 0.18 -1.2
897,587 + ABZR87_RS04305 0.18 +0.3
897,588 - ABZR87_RS04305 0.18 -1.2
897,588 - ABZR87_RS04305 0.18 -0.2
897,677 + ABZR87_RS04305 0.29 -0.3
897,677 + ABZR87_RS04305 0.29 +1.6
897,677 + ABZR87_RS04305 0.29 +0.3
897,677 + ABZR87_RS04305 0.29 +0.9
897,677 + ABZR87_RS04305 0.29 +0.3
897,678 - ABZR87_RS04305 0.29 +0.6
897,678 - ABZR87_RS04305 0.29 +0.6
897,678 - ABZR87_RS04305 0.29 -0.7
897,678 - ABZR87_RS04305 0.29 -0.5
897,678 - ABZR87_RS04305 0.29 -0.1
897,678 - ABZR87_RS04305 0.29 -0.6
897,679 + ABZR87_RS04305 0.29 -0.2
897,680 - ABZR87_RS04305 0.29 +2.2
897,706 - ABZR87_RS04305 0.32 -0.6
897,926 + ABZR87_RS04305 0.59 -0.6
897,927 - ABZR87_RS04305 0.59 -0.2
897,947 - ABZR87_RS04305 0.61 +0.8
897,947 - ABZR87_RS04305 0.61 +0.6
898,253 + -0.4
898,254 - +0.4
898,280 + -0.6
898,280 + +0.2
898,280 + -0.7
898,280 + -0.8
898,281 - -0.2
898,323 + +0.5
898,323 + +1.1
898,324 - -2.3
898,324 - +0.8
898,441 + ABZR87_RS04310 0.16 +0.3
898,441 + ABZR87_RS04310 0.16 -0.8
898,442 - ABZR87_RS04310 0.16 +0.2
898,442 - ABZR87_RS04310 0.16 +1.6
898,442 - ABZR87_RS04310 0.16 -0.3
899,199 + +0.5
899,200 - +0.2
899,201 + -0.0
899,202 - -0.1
899,202 - -0.6
899,253 + +0.1

Or see this region's nucleotide sequence