Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04295 and ABZR87_RS04300 are separated by 145 nucleotides ABZR87_RS04300 and ABZR87_RS04305 are separated by 112 nucleotides ABZR87_RS04305 and ABZR87_RS04310 are separated by 16 nucleotides
ABZR87_RS04295: ABZR87_RS04295 - HU family DNA-binding protein, at 895,956 to 896,234
_RS04295
ABZR87_RS04300: ABZR87_RS04300 - DUF2272 domain-containing protein, at 896,380 to 897,327
_RS04300
ABZR87_RS04305: ABZR87_RS04305 - class II aldolase/adducin family protein, at 897,440 to 898,264
_RS04305
ABZR87_RS04310: ABZR87_RS04310 - 2-dehydropantoate 2-reductase, at 898,281 to 899,258
_RS04310
Position (kb) 896
897
898 Strain fitness (log2 ratio) -2
-1
0
1
2 at 895.461 kb on + strand at 895.462 kb on - strand at 895.462 kb on - strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.465 kb on + strand at 895.562 kb on + strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.563 kb on - strand at 895.620 kb on + strand at 895.621 kb on - strand at 895.634 kb on + strand at 895.638 kb on + strand at 895.652 kb on - strand at 895.661 kb on + strand at 895.662 kb on - strand at 895.662 kb on - strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.665 kb on + strand at 895.668 kb on + strand at 895.668 kb on + strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.669 kb on - strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.671 kb on + strand at 895.672 kb on - strand at 895.672 kb on - strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.674 kb on + strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.675 kb on - strand at 895.680 kb on + strand at 895.681 kb on + strand at 895.681 kb on - strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.682 kb on + strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.683 kb on - strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.686 kb on + strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.687 kb on - strand at 895.698 kb on + strand at 895.698 kb on + strand at 895.699 kb on - strand at 895.804 kb on + strand at 895.804 kb on + strand at 895.805 kb on - strand at 895.805 kb on - strand at 895.847 kb on + strand at 895.848 kb on - strand at 895.848 kb on - strand at 895.930 kb on + strand at 895.930 kb on + strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.931 kb on - strand at 895.934 kb on + strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.935 kb on - strand at 895.996 kb on + strand, within ABZR87_RS04295 at 895.996 kb on + strand, within ABZR87_RS04295 at 895.997 kb on - strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.102 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.132 kb on + strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.133 kb on - strand, within ABZR87_RS04295 at 896.327 kb on + strand at 896.328 kb on - strand at 896.418 kb on + strand at 896.419 kb on - strand at 896.625 kb on + strand, within ABZR87_RS04300 at 896.625 kb on + strand, within ABZR87_RS04300 at 896.625 kb on + strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.626 kb on - strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.629 kb on + strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.630 kb on - strand, within ABZR87_RS04300 at 896.765 kb on + strand, within ABZR87_RS04300 at 896.766 kb on - strand, within ABZR87_RS04300 at 896.849 kb on - strand, within ABZR87_RS04300 at 896.849 kb on - strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.992 kb on + strand, within ABZR87_RS04300 at 896.993 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.085 kb on - strand, within ABZR87_RS04300 at 897.275 kb on - strand at 897.275 kb on - strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.302 kb on + strand at 897.303 kb on - strand at 897.303 kb on - strand at 897.325 kb on + strand at 897.326 kb on - strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.341 kb on + strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.342 kb on - strand at 897.549 kb on - strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.587 kb on + strand, within ABZR87_RS04305 at 897.588 kb on - strand, within ABZR87_RS04305 at 897.588 kb on - strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.677 kb on + strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.678 kb on - strand, within ABZR87_RS04305 at 897.679 kb on + strand, within ABZR87_RS04305 at 897.680 kb on - strand, within ABZR87_RS04305 at 897.706 kb on - strand, within ABZR87_RS04305 at 897.926 kb on + strand, within ABZR87_RS04305 at 897.927 kb on - strand, within ABZR87_RS04305 at 897.947 kb on - strand, within ABZR87_RS04305 at 897.947 kb on - strand, within ABZR87_RS04305 at 898.253 kb on + strand at 898.254 kb on - strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.280 kb on + strand at 898.281 kb on - strand at 898.323 kb on + strand at 898.323 kb on + strand at 898.324 kb on - strand at 898.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 895,461 + -0.2 895,462 - +1.2 895,462 - -1.8 895,465 + +0.5 895,465 + -0.5 895,465 + +0.3 895,465 + -0.1 895,562 + +0.3 895,563 - +0.1 895,563 - +0.6 895,563 - +0.5 895,563 - -0.9 895,563 - +0.5 895,563 - +0.9 895,620 + +0.4 895,621 - -0.4 895,634 + +0.1 895,638 + +1.0 895,652 - -0.4 895,661 + +0.1 895,662 - -0.1 895,662 - -0.4 895,665 + +1.4 895,665 + +1.5 895,665 + +1.4 895,668 + +1.1 895,668 + +0.3 895,669 - -0.8 895,669 - +0.2 895,669 - +0.0 895,669 - -0.2 895,669 - +0.3 895,671 + +0.2 895,671 + +1.0 895,671 + +0.2 895,671 + +0.6 895,671 + +0.6 895,671 + +0.9 895,672 - -0.8 895,672 - -0.5 895,674 + +1.6 895,674 + -0.4 895,674 + -0.1 895,674 + +0.3 895,674 + +0.1 895,674 + +0.8 895,674 + +0.6 895,674 + +0.7 895,674 + -0.5 895,674 + +0.5 895,674 + +0.8 895,674 + -0.4 895,675 - -0.5 895,675 - -0.5 895,675 - -0.5 895,675 - +0.9 895,675 - +0.2 895,675 - -1.1 895,675 - -2.5 895,675 - +0.0 895,675 - +0.1 895,675 - -0.9 895,675 - +0.7 895,675 - -0.6 895,675 - -0.1 895,680 + +0.4 895,681 + -0.3 895,681 - -1.5 895,682 + +1.5 895,682 + +0.2 895,682 + -0.4 895,683 - -0.4 895,683 - -0.1 895,683 - -0.6 895,683 - +0.0 895,683 - +0.3 895,683 - -0.7 895,683 - -0.6 895,683 - -0.1 895,683 - -0.0 895,683 - -0.5 895,683 - +0.7 895,686 + +1.1 895,686 + +0.3 895,686 + +0.4 895,686 + +0.6 895,686 + -1.3 895,687 - -0.0 895,687 - -0.8 895,687 - -2.4 895,687 - -0.7 895,687 - +0.3 895,698 + -0.0 895,698 + +1.1 895,699 - +0.8 895,804 + -1.4 895,804 + -0.0 895,805 - -0.5 895,805 - -0.1 895,847 + -0.9 895,848 - +0.6 895,848 - -0.3 895,930 + -1.0 895,930 + -0.1 895,931 - +2.2 895,931 - +0.4 895,931 - -0.0 895,931 - -1.7 895,931 - -0.4 895,934 + +0.4 895,935 - -2.2 895,935 - -1.5 895,935 - -0.3 895,996 + ABZR87_RS04295 0.14 -1.2 895,996 + ABZR87_RS04295 0.14 -2.0 895,997 - ABZR87_RS04295 0.15 -1.2 896,102 + ABZR87_RS04295 0.52 -1.4 896,102 + ABZR87_RS04295 0.52 -0.5 896,102 + ABZR87_RS04295 0.52 -1.3 896,132 + ABZR87_RS04295 0.63 -2.7 896,132 + ABZR87_RS04295 0.63 -0.4 896,133 - ABZR87_RS04295 0.63 -0.5 896,133 - ABZR87_RS04295 0.63 -1.2 896,133 - ABZR87_RS04295 0.63 -2.7 896,133 - ABZR87_RS04295 0.63 -0.8 896,327 + +0.2 896,328 - -1.1 896,418 + -1.1 896,419 - +0.3 896,625 + ABZR87_RS04300 0.26 +0.6 896,625 + ABZR87_RS04300 0.26 +0.7 896,625 + ABZR87_RS04300 0.26 +0.5 896,626 - ABZR87_RS04300 0.26 +0.1 896,626 - ABZR87_RS04300 0.26 -0.2 896,626 - ABZR87_RS04300 0.26 -1.1 896,629 + ABZR87_RS04300 0.26 +0.3 896,629 + ABZR87_RS04300 0.26 +0.6 896,629 + ABZR87_RS04300 0.26 -0.0 896,629 + ABZR87_RS04300 0.26 -0.6 896,629 + ABZR87_RS04300 0.26 +0.8 896,629 + ABZR87_RS04300 0.26 -0.5 896,629 + ABZR87_RS04300 0.26 -0.2 896,629 + ABZR87_RS04300 0.26 -0.1 896,629 + ABZR87_RS04300 0.26 -0.2 896,629 + ABZR87_RS04300 0.26 -0.8 896,629 + ABZR87_RS04300 0.26 +0.6 896,629 + ABZR87_RS04300 0.26 +1.6 896,630 - ABZR87_RS04300 0.26 +0.3 896,630 - ABZR87_RS04300 0.26 -0.7 896,630 - ABZR87_RS04300 0.26 -0.2 896,630 - ABZR87_RS04300 0.26 -1.2 896,630 - ABZR87_RS04300 0.26 -0.2 896,630 - ABZR87_RS04300 0.26 +0.1 896,630 - ABZR87_RS04300 0.26 -0.6 896,630 - ABZR87_RS04300 0.26 -1.2 896,630 - ABZR87_RS04300 0.26 -0.4 896,630 - ABZR87_RS04300 0.26 -0.6 896,630 - ABZR87_RS04300 0.26 -1.7 896,630 - ABZR87_RS04300 0.26 +0.1 896,630 - ABZR87_RS04300 0.26 +0.1 896,630 - ABZR87_RS04300 0.26 +0.0 896,630 - ABZR87_RS04300 0.26 -0.6 896,630 - ABZR87_RS04300 0.26 +0.4 896,630 - ABZR87_RS04300 0.26 -0.2 896,630 - ABZR87_RS04300 0.26 +0.5 896,765 + ABZR87_RS04300 0.41 +0.6 896,766 - ABZR87_RS04300 0.41 -1.4 896,849 - ABZR87_RS04300 0.49 -0.5 896,849 - ABZR87_RS04300 0.49 +0.6 896,992 + ABZR87_RS04300 0.65 +0.4 896,992 + ABZR87_RS04300 0.65 -0.6 896,992 + ABZR87_RS04300 0.65 -1.2 896,993 - ABZR87_RS04300 0.65 -1.6 897,085 - ABZR87_RS04300 0.74 -0.7 897,085 - ABZR87_RS04300 0.74 -0.9 897,085 - ABZR87_RS04300 0.74 -0.5 897,085 - ABZR87_RS04300 0.74 -0.2 897,275 - -1.4 897,275 - -0.9 897,302 + +0.2 897,302 + -0.9 897,302 + -0.8 897,302 + -0.3 897,302 + -0.7 897,302 + -0.0 897,303 - -1.1 897,303 - +1.3 897,325 + +0.2 897,326 - +0.1 897,341 + +0.1 897,341 + +0.2 897,341 + -2.2 897,341 + -0.1 897,341 + -0.5 897,342 - +0.1 897,342 - -1.0 897,342 - -0.4 897,342 - +0.2 897,342 - +0.3 897,549 - ABZR87_RS04305 0.13 +1.2 897,587 + ABZR87_RS04305 0.18 +0.7 897,587 + ABZR87_RS04305 0.18 -1.2 897,587 + ABZR87_RS04305 0.18 +0.3 897,588 - ABZR87_RS04305 0.18 -1.2 897,588 - ABZR87_RS04305 0.18 -0.2 897,677 + ABZR87_RS04305 0.29 -0.3 897,677 + ABZR87_RS04305 0.29 +1.6 897,677 + ABZR87_RS04305 0.29 +0.3 897,677 + ABZR87_RS04305 0.29 +0.9 897,677 + ABZR87_RS04305 0.29 +0.3 897,678 - ABZR87_RS04305 0.29 +0.6 897,678 - ABZR87_RS04305 0.29 +0.6 897,678 - ABZR87_RS04305 0.29 -0.7 897,678 - ABZR87_RS04305 0.29 -0.5 897,678 - ABZR87_RS04305 0.29 -0.1 897,678 - ABZR87_RS04305 0.29 -0.6 897,679 + ABZR87_RS04305 0.29 -0.2 897,680 - ABZR87_RS04305 0.29 +2.2 897,706 - ABZR87_RS04305 0.32 -0.6 897,926 + ABZR87_RS04305 0.59 -0.6 897,927 - ABZR87_RS04305 0.59 -0.2 897,947 - ABZR87_RS04305 0.61 +0.8 897,947 - ABZR87_RS04305 0.61 +0.6 898,253 + -0.4 898,254 - +0.4 898,280 + -0.6 898,280 + +0.2 898,280 + -0.7 898,280 + -0.8 898,281 - -0.2 898,323 + +0.5 898,323 + +1.1 898,324 - -2.3 898,324 - +0.8
Or see this region's nucleotide sequence