Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04125

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04115 and ABZR87_RS04120 are separated by 37 nucleotidesABZR87_RS04120 and ABZR87_RS04125 overlap by 1 nucleotidesABZR87_RS04125 and ABZR87_RS04130 are separated by 192 nucleotides ABZR87_RS04115: ABZR87_RS04115 - ParA family protein, at 862,686 to 863,471 _RS04115 ABZR87_RS04120: ABZR87_RS04120 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 863,509 to 864,177 _RS04120 ABZR87_RS04125: ABZR87_RS04125 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 864,177 to 866,126 _RS04125 ABZR87_RS04130: ABZR87_RS04130 - LysR family transcriptional regulator, at 866,319 to 867,239 _RS04130 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 863.290 kb on + strand, within ABZR87_RS04115at 863.316 kb on - strand, within ABZR87_RS04115at 863.463 kb on - strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.497 kb on + strandat 863.732 kb on + strand, within ABZR87_RS04120at 864.043 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.045 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.078 kb on - strand, within ABZR87_RS04120at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.446 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.455 kb on - strand, within ABZR87_RS04125at 864.532 kb on + strand, within ABZR87_RS04125at 864.549 kb on - strand, within ABZR87_RS04125at 864.549 kb on - strand, within ABZR87_RS04125at 864.605 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.843 kb on - strand, within ABZR87_RS04125at 864.848 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 864.899 kb on - strand, within ABZR87_RS04125at 865.037 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125at 865.085 kb on - strand, within ABZR87_RS04125at 865.331 kb on - strand, within ABZR87_RS04125at 865.331 kb on - strand, within ABZR87_RS04125at 865.619 kb on - strand, within ABZR87_RS04125at 865.619 kb on - strand, within ABZR87_RS04125at 865.619 kb on - strand, within ABZR87_RS04125at 865.619 kb on - strand, within ABZR87_RS04125at 865.619 kb on - strand, within ABZR87_RS04125at 865.623 kb on - strand, within ABZR87_RS04125at 865.623 kb on - strand, within ABZR87_RS04125at 865.623 kb on - strand, within ABZR87_RS04125at 865.817 kb on - strand, within ABZR87_RS04125at 865.817 kb on - strand, within ABZR87_RS04125at 865.817 kb on - strand, within ABZR87_RS04125at 865.817 kb on - strand, within ABZR87_RS04125at 866.120 kb on - strandat 866.172 kb on + strandat 866.172 kb on + strandat 866.172 kb on + strandat 866.173 kb on - strandat 866.174 kb on + strandat 866.174 kb on + strandat 866.174 kb on + strandat 866.175 kb on - strandat 866.175 kb on - strandat 866.175 kb on - strandat 866.175 kb on - strandat 866.187 kb on + strandat 866.187 kb on + strandat 866.310 kb on + strandat 866.310 kb on + strandat 866.311 kb on - strandat 866.320 kb on + strandat 866.320 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.392 kb on + strandat 866.393 kb on - strandat 866.393 kb on - strandat 866.393 kb on - strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.407 kb on + strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.408 kb on - strandat 866.610 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.611 kb on + strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.612 kb on - strand, within ABZR87_RS04130at 866.646 kb on - strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.701 kb on + strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.702 kb on - strand, within ABZR87_RS04130at 866.824 kb on - strand, within ABZR87_RS04130at 866.863 kb on + strand, within ABZR87_RS04130at 866.863 kb on + strand, within ABZR87_RS04130at 866.908 kb on + strand, within ABZR87_RS04130at 866.909 kb on - strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.986 kb on + strand, within ABZR87_RS04130at 866.987 kb on - strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130at 867.062 kb on + strand, within ABZR87_RS04130

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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863,290 + ABZR87_RS04115 0.77 -0.7
863,316 - ABZR87_RS04115 0.80 +0.6
863,463 - +1.1
863,497 + -1.3
863,497 + +0.6
863,497 + -0.9
863,497 + +1.0
863,732 + ABZR87_RS04120 0.33 +0.0
864,043 - ABZR87_RS04120 0.80 +0.9
864,045 - ABZR87_RS04120 0.80 +1.2
864,045 - ABZR87_RS04120 0.80 +0.1
864,045 - ABZR87_RS04120 0.80 -0.9
864,078 - ABZR87_RS04120 0.85 -2.4
864,078 - ABZR87_RS04120 0.85 +0.7
864,078 - ABZR87_RS04120 0.85 -1.2
864,078 - ABZR87_RS04120 0.85 +0.0
864,446 - ABZR87_RS04125 0.14 -1.6
864,446 - ABZR87_RS04125 0.14 +0.1
864,446 - ABZR87_RS04125 0.14 -2.8
864,446 - ABZR87_RS04125 0.14 -2.4
864,455 - ABZR87_RS04125 0.14 -1.2
864,455 - ABZR87_RS04125 0.14 -0.5
864,455 - ABZR87_RS04125 0.14 -1.4
864,532 + ABZR87_RS04125 0.18 -1.8
864,549 - ABZR87_RS04125 0.19 -1.8
864,549 - ABZR87_RS04125 0.19 -0.9
864,605 - ABZR87_RS04125 0.22 -0.2
864,843 - ABZR87_RS04125 0.34 -0.7
864,843 - ABZR87_RS04125 0.34 -2.5
864,843 - ABZR87_RS04125 0.34 -1.8
864,843 - ABZR87_RS04125 0.34 -1.9
864,848 - ABZR87_RS04125 0.34 -1.1
864,899 - ABZR87_RS04125 0.37 -0.8
864,899 - ABZR87_RS04125 0.37 -0.5
864,899 - ABZR87_RS04125 0.37 -2.8
865,037 - ABZR87_RS04125 0.44 -1.1
865,085 - ABZR87_RS04125 0.47 -1.2
865,085 - ABZR87_RS04125 0.47 +1.3
865,085 - ABZR87_RS04125 0.47 -0.9
865,331 - ABZR87_RS04125 0.59 -2.1
865,331 - ABZR87_RS04125 0.59 +0.8
865,619 - ABZR87_RS04125 0.74 -0.1
865,619 - ABZR87_RS04125 0.74 -0.7
865,619 - ABZR87_RS04125 0.74 -0.9
865,619 - ABZR87_RS04125 0.74 -2.4
865,619 - ABZR87_RS04125 0.74 -2.1
865,623 - ABZR87_RS04125 0.74 -0.4
865,623 - ABZR87_RS04125 0.74 -0.4
865,623 - ABZR87_RS04125 0.74 -0.4
865,817 - ABZR87_RS04125 0.84 -1.5
865,817 - ABZR87_RS04125 0.84 -1.5
865,817 - ABZR87_RS04125 0.84 -1.8
865,817 - ABZR87_RS04125 0.84 +0.6
866,120 - +1.4
866,172 + -0.5
866,172 + +0.1
866,172 + +0.6
866,173 - -1.3
866,174 + +0.3
866,174 + +0.7
866,174 + -0.1
866,175 - +0.1
866,175 - +0.4
866,175 - +0.7
866,175 - +0.1
866,187 + +0.1
866,187 + -0.9
866,310 + -0.9
866,310 + -0.0
866,311 - -0.7
866,320 + +0.1
866,320 + -0.1
866,392 + +2.2
866,392 + -0.9
866,392 + +1.6
866,392 + +0.9
866,392 + -0.4
866,392 + -1.2
866,392 + +1.2
866,392 + -0.1
866,392 + +0.0
866,393 - +0.1
866,393 - -1.9
866,393 - +0.1
866,407 + +0.4
866,407 + +0.9
866,407 + -0.6
866,407 + -0.2
866,407 + -0.3
866,407 + -0.2
866,408 - -0.2
866,408 - -0.4
866,408 - -1.4
866,408 - -2.4
866,610 + ABZR87_RS04130 0.32 -0.2
866,611 + ABZR87_RS04130 0.32 -0.2
866,611 + ABZR87_RS04130 0.32 +0.1
866,611 + ABZR87_RS04130 0.32 +0.3
866,611 + ABZR87_RS04130 0.32 -0.4
866,611 + ABZR87_RS04130 0.32 -0.7
866,612 - ABZR87_RS04130 0.32 -1.4
866,612 - ABZR87_RS04130 0.32 +0.6
866,612 - ABZR87_RS04130 0.32 -0.2
866,646 - ABZR87_RS04130 0.36 +0.1
866,701 + ABZR87_RS04130 0.41 +0.7
866,701 + ABZR87_RS04130 0.41 -0.3
866,701 + ABZR87_RS04130 0.41 -1.7
866,701 + ABZR87_RS04130 0.41 +0.4
866,702 - ABZR87_RS04130 0.42 +0.6
866,702 - ABZR87_RS04130 0.42 +0.1
866,702 - ABZR87_RS04130 0.42 -1.4
866,824 - ABZR87_RS04130 0.55 -0.5
866,863 + ABZR87_RS04130 0.59 -0.4
866,863 + ABZR87_RS04130 0.59 +0.4
866,908 + ABZR87_RS04130 0.64 -0.7
866,909 - ABZR87_RS04130 0.64 +0.1
866,986 + ABZR87_RS04130 0.72 +1.3
866,986 + ABZR87_RS04130 0.72 +0.3
866,986 + ABZR87_RS04130 0.72 -0.8
866,987 - ABZR87_RS04130 0.73 -0.5
867,062 + ABZR87_RS04130 0.81 +0.4
867,062 + ABZR87_RS04130 0.81 -0.5
867,062 + ABZR87_RS04130 0.81 -0.4

Or see this region's nucleotide sequence