Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03850

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03845 and ABZR87_RS03850 are separated by 94 nucleotidesABZR87_RS03850 and ABZR87_RS03855 overlap by 4 nucleotides ABZR87_RS03845: ABZR87_RS03845 - M20/M25/M40 family metallo-hydrolase, at 793,703 to 794,977 _RS03845 ABZR87_RS03850: ABZR87_RS03850 - ureidoglycolate lyase, at 795,072 to 795,599 _RS03850 ABZR87_RS03855: ABZR87_RS03855 - allantoicase, at 795,596 to 796,606 _RS03855 Position (kb) 795 796Strain fitness (log2 ratio) -2 -1 0 1at 794.233 kb on - strand, within ABZR87_RS03845at 794.233 kb on - strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.238 kb on + strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.239 kb on - strand, within ABZR87_RS03845at 794.254 kb on + strand, within ABZR87_RS03845at 794.254 kb on + strand, within ABZR87_RS03845at 794.255 kb on - strand, within ABZR87_RS03845at 794.255 kb on - strand, within ABZR87_RS03845at 794.255 kb on - strand, within ABZR87_RS03845at 794.255 kb on - strand, within ABZR87_RS03845at 794.370 kb on + strand, within ABZR87_RS03845at 794.394 kb on + strand, within ABZR87_RS03845at 794.394 kb on + strand, within ABZR87_RS03845at 794.394 kb on + strand, within ABZR87_RS03845at 794.395 kb on - strand, within ABZR87_RS03845at 794.395 kb on - strand, within ABZR87_RS03845at 794.395 kb on - strand, within ABZR87_RS03845at 794.463 kb on + strand, within ABZR87_RS03845at 794.463 kb on + strand, within ABZR87_RS03845at 794.463 kb on + strand, within ABZR87_RS03845at 794.463 kb on + strand, within ABZR87_RS03845at 794.463 kb on + strand, within ABZR87_RS03845at 794.464 kb on - strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.544 kb on + strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.545 kb on - strand, within ABZR87_RS03845at 794.628 kb on + strand, within ABZR87_RS03845at 795.073 kb on + strandat 795.073 kb on + strandat 795.073 kb on + strandat 795.073 kb on + strandat 795.073 kb on + strandat 795.074 kb on - strandat 795.074 kb on - strandat 795.074 kb on - strandat 795.074 kb on - strandat 795.074 kb on - strandat 795.074 kb on - strandat 795.226 kb on + strand, within ABZR87_RS03850at 795.226 kb on + strand, within ABZR87_RS03850at 795.226 kb on + strand, within ABZR87_RS03850at 795.227 kb on - strand, within ABZR87_RS03850at 795.310 kb on + strand, within ABZR87_RS03850at 795.310 kb on + strand, within ABZR87_RS03850at 795.310 kb on + strand, within ABZR87_RS03850at 795.699 kb on + strand, within ABZR87_RS03855at 795.699 kb on + strand, within ABZR87_RS03855at 795.699 kb on + strand, within ABZR87_RS03855at 795.699 kb on + strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.700 kb on - strand, within ABZR87_RS03855at 795.702 kb on + strand, within ABZR87_RS03855at 795.702 kb on + strand, within ABZR87_RS03855at 795.702 kb on + strand, within ABZR87_RS03855at 795.702 kb on + strand, within ABZR87_RS03855at 795.702 kb on + strand, within ABZR87_RS03855at 795.703 kb on - strand, within ABZR87_RS03855at 795.703 kb on - strand, within ABZR87_RS03855at 795.703 kb on - strand, within ABZR87_RS03855at 796.023 kb on + strand, within ABZR87_RS03855at 796.023 kb on + strand, within ABZR87_RS03855at 796.023 kb on + strand, within ABZR87_RS03855at 796.023 kb on + strand, within ABZR87_RS03855at 796.023 kb on + strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.024 kb on - strand, within ABZR87_RS03855at 796.101 kb on + strand, within ABZR87_RS03855at 796.101 kb on + strand, within ABZR87_RS03855at 796.102 kb on - strand, within ABZR87_RS03855at 796.185 kb on + strand, within ABZR87_RS03855at 796.185 kb on + strand, within ABZR87_RS03855at 796.185 kb on + strand, within ABZR87_RS03855at 796.185 kb on + strand, within ABZR87_RS03855at 796.186 kb on - strand, within ABZR87_RS03855at 796.186 kb on - strand, within ABZR87_RS03855at 796.186 kb on - strand, within ABZR87_RS03855at 796.186 kb on - strand, within ABZR87_RS03855at 796.186 kb on - strand, within ABZR87_RS03855at 796.269 kb on + strand, within ABZR87_RS03855at 796.269 kb on + strand, within ABZR87_RS03855at 796.270 kb on - strand, within ABZR87_RS03855at 796.270 kb on - strand, within ABZR87_RS03855at 796.380 kb on + strand, within ABZR87_RS03855at 796.381 kb on - strand, within ABZR87_RS03855at 796.381 kb on - strand, within ABZR87_RS03855at 796.440 kb on + strand, within ABZR87_RS03855at 796.440 kb on + strand, within ABZR87_RS03855at 796.440 kb on + strand, within ABZR87_RS03855at 796.440 kb on + strand, within ABZR87_RS03855at 796.441 kb on - strand, within ABZR87_RS03855at 796.441 kb on - strand, within ABZR87_RS03855at 796.594 kb on + strandat 796.594 kb on + strandat 796.594 kb on + strandat 796.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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794,233 - ABZR87_RS03845 0.42 -1.9
794,233 - ABZR87_RS03845 0.42 +0.4
794,238 + ABZR87_RS03845 0.42 +0.9
794,238 + ABZR87_RS03845 0.42 +0.5
794,238 + ABZR87_RS03845 0.42 +0.3
794,238 + ABZR87_RS03845 0.42 -0.2
794,238 + ABZR87_RS03845 0.42 +0.9
794,238 + ABZR87_RS03845 0.42 +1.7
794,238 + ABZR87_RS03845 0.42 +0.2
794,238 + ABZR87_RS03845 0.42 +0.5
794,238 + ABZR87_RS03845 0.42 -1.1
794,238 + ABZR87_RS03845 0.42 +0.1
794,238 + ABZR87_RS03845 0.42 +0.1
794,238 + ABZR87_RS03845 0.42 +0.3
794,238 + ABZR87_RS03845 0.42 -0.9
794,238 + ABZR87_RS03845 0.42 +0.4
794,238 + ABZR87_RS03845 0.42 -1.1
794,238 + ABZR87_RS03845 0.42 -0.1
794,238 + ABZR87_RS03845 0.42 -0.9
794,238 + ABZR87_RS03845 0.42 +0.5
794,238 + ABZR87_RS03845 0.42 -0.1
794,238 + ABZR87_RS03845 0.42 +0.1
794,238 + ABZR87_RS03845 0.42 -1.3
794,239 - ABZR87_RS03845 0.42 +0.4
794,239 - ABZR87_RS03845 0.42 -0.8
794,239 - ABZR87_RS03845 0.42 -1.5
794,239 - ABZR87_RS03845 0.42 +0.1
794,239 - ABZR87_RS03845 0.42 +0.4
794,239 - ABZR87_RS03845 0.42 +0.2
794,239 - ABZR87_RS03845 0.42 +1.5
794,239 - ABZR87_RS03845 0.42 +0.4
794,239 - ABZR87_RS03845 0.42 +0.5
794,239 - ABZR87_RS03845 0.42 -0.5
794,239 - ABZR87_RS03845 0.42 -0.7
794,239 - ABZR87_RS03845 0.42 +0.4
794,239 - ABZR87_RS03845 0.42 +0.4
794,254 + ABZR87_RS03845 0.43 -1.2
794,254 + ABZR87_RS03845 0.43 +0.8
794,255 - ABZR87_RS03845 0.43 +0.3
794,255 - ABZR87_RS03845 0.43 -0.5
794,255 - ABZR87_RS03845 0.43 -0.4
794,255 - ABZR87_RS03845 0.43 +0.1
794,370 + ABZR87_RS03845 0.52 -0.0
794,394 + ABZR87_RS03845 0.54 +0.3
794,394 + ABZR87_RS03845 0.54 +0.0
794,394 + ABZR87_RS03845 0.54 -0.1
794,395 - ABZR87_RS03845 0.54 +0.7
794,395 - ABZR87_RS03845 0.54 -0.2
794,395 - ABZR87_RS03845 0.54 +0.7
794,463 + ABZR87_RS03845 0.60 -1.0
794,463 + ABZR87_RS03845 0.60 -0.5
794,463 + ABZR87_RS03845 0.60 +0.2
794,463 + ABZR87_RS03845 0.60 -0.5
794,463 + ABZR87_RS03845 0.60 -0.8
794,464 - ABZR87_RS03845 0.60 -0.7
794,544 + ABZR87_RS03845 0.66 +0.4
794,544 + ABZR87_RS03845 0.66 +0.5
794,544 + ABZR87_RS03845 0.66 -0.7
794,544 + ABZR87_RS03845 0.66 -1.3
794,544 + ABZR87_RS03845 0.66 +0.2
794,544 + ABZR87_RS03845 0.66 +0.0
794,544 + ABZR87_RS03845 0.66 +0.1
794,544 + ABZR87_RS03845 0.66 -0.4
794,544 + ABZR87_RS03845 0.66 -0.9
794,544 + ABZR87_RS03845 0.66 +0.6
794,545 - ABZR87_RS03845 0.66 -0.2
794,545 - ABZR87_RS03845 0.66 +0.0
794,545 - ABZR87_RS03845 0.66 +1.5
794,545 - ABZR87_RS03845 0.66 -0.6
794,545 - ABZR87_RS03845 0.66 +0.3
794,545 - ABZR87_RS03845 0.66 +0.9
794,628 + ABZR87_RS03845 0.73 -0.8
795,073 + +0.3
795,073 + +0.1
795,073 + -1.3
795,073 + +0.1
795,073 + +0.1
795,074 - -0.3
795,074 - -2.6
795,074 - +1.6
795,074 - +0.6
795,074 - +0.2
795,074 - +0.6
795,226 + ABZR87_RS03850 0.29 -0.4
795,226 + ABZR87_RS03850 0.29 -1.6
795,226 + ABZR87_RS03850 0.29 -1.8
795,227 - ABZR87_RS03850 0.29 -0.0
795,310 + ABZR87_RS03850 0.45 -0.9
795,310 + ABZR87_RS03850 0.45 -0.5
795,310 + ABZR87_RS03850 0.45 -0.4
795,699 + ABZR87_RS03855 0.10 -1.0
795,699 + ABZR87_RS03855 0.10 -0.8
795,699 + ABZR87_RS03855 0.10 -0.7
795,699 + ABZR87_RS03855 0.10 -1.6
795,700 - ABZR87_RS03855 0.10 -0.6
795,700 - ABZR87_RS03855 0.10 +0.4
795,700 - ABZR87_RS03855 0.10 -1.1
795,700 - ABZR87_RS03855 0.10 -0.3
795,700 - ABZR87_RS03855 0.10 -0.0
795,700 - ABZR87_RS03855 0.10 -1.2
795,700 - ABZR87_RS03855 0.10 -0.8
795,700 - ABZR87_RS03855 0.10 -0.5
795,702 + ABZR87_RS03855 0.10 +0.2
795,702 + ABZR87_RS03855 0.10 -0.0
795,702 + ABZR87_RS03855 0.10 -0.8
795,702 + ABZR87_RS03855 0.10 -0.9
795,702 + ABZR87_RS03855 0.10 +0.1
795,703 - ABZR87_RS03855 0.11 +0.1
795,703 - ABZR87_RS03855 0.11 -0.1
795,703 - ABZR87_RS03855 0.11 +0.4
796,023 + ABZR87_RS03855 0.42 -1.0
796,023 + ABZR87_RS03855 0.42 -0.4
796,023 + ABZR87_RS03855 0.42 +0.7
796,023 + ABZR87_RS03855 0.42 +0.1
796,023 + ABZR87_RS03855 0.42 +0.2
796,024 - ABZR87_RS03855 0.42 +0.2
796,024 - ABZR87_RS03855 0.42 -0.2
796,024 - ABZR87_RS03855 0.42 -0.2
796,024 - ABZR87_RS03855 0.42 -0.6
796,024 - ABZR87_RS03855 0.42 -0.4
796,024 - ABZR87_RS03855 0.42 -0.9
796,024 - ABZR87_RS03855 0.42 +0.2
796,024 - ABZR87_RS03855 0.42 +0.4
796,101 + ABZR87_RS03855 0.50 -0.7
796,101 + ABZR87_RS03855 0.50 -1.0
796,102 - ABZR87_RS03855 0.50 +0.3
796,185 + ABZR87_RS03855 0.58 -0.6
796,185 + ABZR87_RS03855 0.58 -0.9
796,185 + ABZR87_RS03855 0.58 -0.6
796,185 + ABZR87_RS03855 0.58 -0.2
796,186 - ABZR87_RS03855 0.58 +0.7
796,186 - ABZR87_RS03855 0.58 +0.1
796,186 - ABZR87_RS03855 0.58 -0.4
796,186 - ABZR87_RS03855 0.58 +0.4
796,186 - ABZR87_RS03855 0.58 -1.7
796,269 + ABZR87_RS03855 0.67 -1.9
796,269 + ABZR87_RS03855 0.67 -1.5
796,270 - ABZR87_RS03855 0.67 +0.1
796,270 - ABZR87_RS03855 0.67 -0.7
796,380 + ABZR87_RS03855 0.78 -1.8
796,381 - ABZR87_RS03855 0.78 -1.0
796,381 - ABZR87_RS03855 0.78 -0.5
796,440 + ABZR87_RS03855 0.83 -0.8
796,440 + ABZR87_RS03855 0.83 +0.3
796,440 + ABZR87_RS03855 0.83 -0.6
796,440 + ABZR87_RS03855 0.83 +0.1
796,441 - ABZR87_RS03855 0.84 +1.0
796,441 - ABZR87_RS03855 0.84 +0.3
796,594 + +0.0
796,594 + -0.6
796,594 + -0.5
796,595 - -0.1

Or see this region's nucleotide sequence