Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03610 and ABZR87_RS03615 are separated by 189 nucleotides ABZR87_RS03615 and ABZR87_RS03620 are separated by 33 nucleotides ABZR87_RS03620 and ABZR87_RS03625 are separated by 105 nucleotides ABZR87_RS03625 and ABZR87_RS03630 are separated by 109 nucleotides
ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760
_RS03610
ABZR87_RS03615: ABZR87_RS03615 - Hsp20/alpha crystallin family protein, at 758,950 to 759,393
_RS03615
ABZR87_RS03620: ABZR87_RS03620 - Hsp20/alpha crystallin family protein, at 759,427 to 759,846
_RS03620
ABZR87_RS03625: ABZR87_RS03625 - hypothetical protein, at 759,952 to 760,197
_RS03625
ABZR87_RS03630: ABZR87_RS03630 - DUF892 family protein, at 760,307 to 760,819
_RS03630
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 758.059 kb on + strand at 758.059 kb on + strand at 758.108 kb on - strand at 758.156 kb on + strand at 758.163 kb on + strand at 758.315 kb on + strand, within ABZR87_RS03610 at 758.315 kb on + strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.400 kb on - strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on - strand, within ABZR87_RS03610 at 758.671 kb on - strand, within ABZR87_RS03610 at 758.779 kb on - strand at 758.814 kb on + strand at 758.814 kb on + strand at 758.819 kb on + strand at 758.819 kb on + strand at 758.820 kb on - strand at 758.820 kb on - strand at 758.907 kb on + strand at 758.907 kb on + strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 759.232 kb on + strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.924 kb on + strand at 759.937 kb on + strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.938 kb on - strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.940 kb on + strand at 759.941 kb on - strand at 759.941 kb on - strand at 759.941 kb on - strand at 759.941 kb on - strand at 760.105 kb on - strand, within ABZR87_RS03625 at 760.110 kb on + strand, within ABZR87_RS03625 at 760.195 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.292 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 757,963 + -0.2 757,963 + +0.7 757,963 + +0.8 757,963 + -0.0 757,963 + +0.1 757,963 + +0.6 757,963 + -0.8 757,963 + -0.2 757,964 - -1.3 757,964 - +0.6 757,964 - +0.3 757,964 - -2.1 757,964 - +2.2 758,059 + -0.5 758,059 + -0.0 758,108 - -0.3 758,156 + -0.6 758,163 + -1.3 758,315 + ABZR87_RS03610 0.31 -1.2 758,315 + ABZR87_RS03610 0.31 -0.3 758,316 - ABZR87_RS03610 0.31 -1.0 758,316 - ABZR87_RS03610 0.31 -0.8 758,399 + ABZR87_RS03610 0.44 -0.2 758,399 + ABZR87_RS03610 0.44 -0.7 758,400 - ABZR87_RS03610 0.44 +0.3 758,670 + ABZR87_RS03610 0.86 +0.1 758,670 + ABZR87_RS03610 0.86 -1.8 758,670 - ABZR87_RS03610 0.86 -0.3 758,671 - ABZR87_RS03610 0.86 +0.3 758,779 - +0.4 758,814 + +0.7 758,814 + +0.2 758,819 + -0.5 758,819 + -0.4 758,820 - +0.2 758,820 - -0.6 758,907 + -0.0 758,907 + +0.3 758,908 - +0.1 758,908 - +2.0 758,908 - +0.1 758,908 - -0.3 759,232 + ABZR87_RS03615 0.64 +0.8 759,233 - ABZR87_RS03615 0.64 -0.2 759,233 - ABZR87_RS03615 0.64 +0.5 759,233 - ABZR87_RS03615 0.64 +0.7 759,316 + ABZR87_RS03615 0.82 +0.3 759,316 + ABZR87_RS03615 0.82 -0.5 759,316 + ABZR87_RS03615 0.82 +1.5 759,316 + ABZR87_RS03615 0.82 +0.7 759,316 + ABZR87_RS03615 0.82 +0.1 759,317 - ABZR87_RS03615 0.83 +0.8 759,317 - ABZR87_RS03615 0.83 +0.5 759,317 - ABZR87_RS03615 0.83 +0.7 759,317 - ABZR87_RS03615 0.83 +0.0 759,924 + -0.3 759,937 + +1.4 759,938 - -0.5 759,938 - -0.5 759,938 - -0.2 759,938 - +0.5 759,938 - +0.2 759,940 + +0.1 759,940 + +0.7 759,940 + +0.8 759,940 + +0.6 759,940 + +0.3 759,940 + +1.0 759,940 + +0.3 759,941 - +0.2 759,941 - +1.7 759,941 - +0.8 759,941 - +0.3 760,105 - ABZR87_RS03625 0.62 -0.5 760,110 + ABZR87_RS03625 0.64 +0.1 760,195 + +0.7 760,292 + +0.1 760,292 + -0.2 760,292 + +0.8 760,292 + -1.7 760,312 + -0.9 760,312 + -0.8 760,312 + +0.9 760,312 + -1.3 760,312 + -0.4 760,312 + +0.9 760,313 - -0.3 760,313 - -1.1 760,313 - -0.8 760,313 - -0.2 760,313 - -0.3 760,313 - -0.8 760,313 - +0.3 760,313 - +0.9 760,313 - -0.4
Or see this region's nucleotide sequence