Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03600 and ABZR87_RS03605 are separated by 111 nucleotides ABZR87_RS03605 and ABZR87_RS03610 are separated by 173 nucleotides ABZR87_RS03610 and ABZR87_RS03615 are separated by 189 nucleotides ABZR87_RS03615 and ABZR87_RS03620 are separated by 33 nucleotides
ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516
_RS03600
ABZR87_RS03605: ABZR87_RS03605 - co-chaperone GroES, at 757,628 to 757,945
_RS03605
ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760
_RS03610
ABZR87_RS03615: ABZR87_RS03615 - Hsp20/alpha crystallin family protein, at 758,950 to 759,393
_RS03615
ABZR87_RS03620: ABZR87_RS03620 - Hsp20/alpha crystallin family protein, at 759,427 to 759,846
_RS03620
Position (kb) 758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 757.439 kb on - strand at 757.471 kb on + strand at 757.472 kb on - strand at 757.472 kb on - strand at 757.532 kb on + strand at 757.737 kb on + strand, within ABZR87_RS03605 at 757.737 kb on + strand, within ABZR87_RS03605 at 757.738 kb on - strand, within ABZR87_RS03605 at 757.738 kb on - strand, within ABZR87_RS03605 at 757.926 kb on + strand at 757.926 kb on + strand at 757.926 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.963 kb on + strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 757.964 kb on - strand at 758.059 kb on + strand at 758.059 kb on + strand at 758.108 kb on - strand at 758.156 kb on + strand at 758.163 kb on + strand at 758.315 kb on + strand, within ABZR87_RS03610 at 758.315 kb on + strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.316 kb on - strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.399 kb on + strand, within ABZR87_RS03610 at 758.400 kb on - strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on + strand, within ABZR87_RS03610 at 758.670 kb on - strand, within ABZR87_RS03610 at 758.671 kb on - strand, within ABZR87_RS03610 at 758.779 kb on - strand at 758.814 kb on + strand at 758.814 kb on + strand at 758.819 kb on + strand at 758.819 kb on + strand at 758.820 kb on - strand at 758.820 kb on - strand at 758.907 kb on + strand at 758.907 kb on + strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 758.908 kb on - strand at 759.232 kb on + strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.233 kb on - strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.316 kb on + strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615 at 759.317 kb on - strand, within ABZR87_RS03615
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 757,439 - +0.2 757,471 + +0.6 757,472 - -0.6 757,472 - -0.9 757,532 + -0.3 757,737 + ABZR87_RS03605 0.34 -0.8 757,737 + ABZR87_RS03605 0.34 +0.4 757,738 - ABZR87_RS03605 0.35 +1.0 757,738 - ABZR87_RS03605 0.35 +0.6 757,926 + -0.1 757,926 + -0.2 757,926 + +0.3 757,963 + -0.2 757,963 + +0.7 757,963 + +0.8 757,963 + -0.0 757,963 + +0.1 757,963 + +0.6 757,963 + -0.8 757,963 + -0.2 757,964 - -1.3 757,964 - +0.6 757,964 - +0.3 757,964 - -2.1 757,964 - +2.2 758,059 + -0.5 758,059 + -0.0 758,108 - -0.3 758,156 + -0.6 758,163 + -1.3 758,315 + ABZR87_RS03610 0.31 -1.2 758,315 + ABZR87_RS03610 0.31 -0.3 758,316 - ABZR87_RS03610 0.31 -1.0 758,316 - ABZR87_RS03610 0.31 -0.8 758,399 + ABZR87_RS03610 0.44 -0.2 758,399 + ABZR87_RS03610 0.44 -0.7 758,400 - ABZR87_RS03610 0.44 +0.3 758,670 + ABZR87_RS03610 0.86 +0.1 758,670 + ABZR87_RS03610 0.86 -1.8 758,670 - ABZR87_RS03610 0.86 -0.3 758,671 - ABZR87_RS03610 0.86 +0.3 758,779 - +0.4 758,814 + +0.7 758,814 + +0.2 758,819 + -0.5 758,819 + -0.4 758,820 - +0.2 758,820 - -0.6 758,907 + -0.0 758,907 + +0.3 758,908 - +0.1 758,908 - +2.0 758,908 - +0.1 758,908 - -0.3 759,232 + ABZR87_RS03615 0.64 +0.8 759,233 - ABZR87_RS03615 0.64 -0.2 759,233 - ABZR87_RS03615 0.64 +0.5 759,233 - ABZR87_RS03615 0.64 +0.7 759,316 + ABZR87_RS03615 0.82 +0.3 759,316 + ABZR87_RS03615 0.82 -0.5 759,316 + ABZR87_RS03615 0.82 +1.5 759,316 + ABZR87_RS03615 0.82 +0.7 759,316 + ABZR87_RS03615 0.82 +0.1 759,317 - ABZR87_RS03615 0.83 +0.8 759,317 - ABZR87_RS03615 0.83 +0.5 759,317 - ABZR87_RS03615 0.83 +0.7 759,317 - ABZR87_RS03615 0.83 +0.0
Or see this region's nucleotide sequence