Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03600

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03590 and ABZR87_RS03595 are separated by 160 nucleotidesABZR87_RS03595 and ABZR87_RS03600 are separated by 107 nucleotidesABZR87_RS03600 and ABZR87_RS03605 are separated by 111 nucleotidesABZR87_RS03605 and ABZR87_RS03610 are separated by 173 nucleotides ABZR87_RS03590: ABZR87_RS03590 - SDR family oxidoreductase, at 754,625 to 755,374 _RS03590 ABZR87_RS03595: ABZR87_RS03595 - hypothetical protein, at 755,535 to 755,786 _RS03595 ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516 _RS03600 ABZR87_RS03605: ABZR87_RS03605 - co-chaperone GroES, at 757,628 to 757,945 _RS03605 ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760 _RS03610 Position (kb) 755 756 757 758Strain fitness (log2 ratio) -2 -1 0 1 2at 755.075 kb on + strand, within ABZR87_RS03590at 755.076 kb on - strand, within ABZR87_RS03590at 755.221 kb on - strand, within ABZR87_RS03590at 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.326 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.536 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.778 kb on + strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.779 kb on - strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.898 kb on + strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 755.899 kb on - strandat 756.014 kb on - strandat 756.084 kb on + strand, within ABZR87_RS03600at 756.084 kb on + strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.085 kb on - strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.090 kb on + strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.091 kb on - strand, within ABZR87_RS03600at 756.438 kb on + strand, within ABZR87_RS03600at 756.438 kb on + strand, within ABZR87_RS03600at 756.439 kb on - strand, within ABZR87_RS03600at 756.830 kb on - strand, within ABZR87_RS03600at 756.876 kb on + strand, within ABZR87_RS03600at 756.877 kb on - strand, within ABZR87_RS03600at 756.877 kb on - strand, within ABZR87_RS03600at 756.909 kb on + strand, within ABZR87_RS03600at 756.909 kb on + strand, within ABZR87_RS03600at 756.922 kb on - strand, within ABZR87_RS03600at 757.439 kb on - strandat 757.471 kb on + strandat 757.472 kb on - strandat 757.472 kb on - strandat 757.532 kb on + strandat 757.737 kb on + strand, within ABZR87_RS03605at 757.737 kb on + strand, within ABZR87_RS03605at 757.738 kb on - strand, within ABZR87_RS03605at 757.738 kb on - strand, within ABZR87_RS03605at 757.926 kb on + strandat 757.926 kb on + strandat 757.926 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 758.059 kb on + strandat 758.059 kb on + strandat 758.108 kb on - strandat 758.156 kb on + strandat 758.163 kb on + strandat 758.315 kb on + strand, within ABZR87_RS03610at 758.315 kb on + strand, within ABZR87_RS03610at 758.316 kb on - strand, within ABZR87_RS03610at 758.316 kb on - strand, within ABZR87_RS03610at 758.399 kb on + strand, within ABZR87_RS03610at 758.399 kb on + strand, within ABZR87_RS03610at 758.400 kb on - strand, within ABZR87_RS03610

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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755,075 + ABZR87_RS03590 0.60 -0.0
755,076 - ABZR87_RS03590 0.60 +0.2
755,221 - ABZR87_RS03590 0.79 -0.8
755,326 + +0.8
755,326 + -0.3
755,326 + +0.6
755,326 + +0.9
755,536 + -0.2
755,536 + -0.2
755,536 + -0.5
755,536 + -0.2
755,778 + +0.3
755,778 + +0.5
755,778 + +0.0
755,778 + -0.3
755,778 + +0.4
755,779 - +0.2
755,779 - -0.4
755,779 - -0.1
755,779 - -0.2
755,898 + +0.5
755,898 + +0.7
755,898 + -0.0
755,898 + -0.3
755,898 + -1.0
755,899 - -1.3
755,899 - -0.5
755,899 - +0.2
755,899 - +0.5
756,014 - -0.8
756,084 + ABZR87_RS03600 0.12 -0.3
756,084 + ABZR87_RS03600 0.12 -0.2
756,085 - ABZR87_RS03600 0.12 +0.0
756,085 - ABZR87_RS03600 0.12 -0.8
756,085 - ABZR87_RS03600 0.12 -0.2
756,085 - ABZR87_RS03600 0.12 +0.2
756,090 + ABZR87_RS03600 0.12 -0.5
756,090 + ABZR87_RS03600 0.12 +0.2
756,090 + ABZR87_RS03600 0.12 -1.5
756,090 + ABZR87_RS03600 0.12 -1.8
756,090 + ABZR87_RS03600 0.12 +0.7
756,090 + ABZR87_RS03600 0.12 -1.0
756,090 + ABZR87_RS03600 0.12 +0.7
756,090 + ABZR87_RS03600 0.12 -0.9
756,090 + ABZR87_RS03600 0.12 +0.3
756,090 + ABZR87_RS03600 0.12 +0.9
756,090 + ABZR87_RS03600 0.12 -0.0
756,090 + ABZR87_RS03600 0.12 -0.2
756,090 + ABZR87_RS03600 0.12 +0.7
756,090 + ABZR87_RS03600 0.12 -1.1
756,091 - ABZR87_RS03600 0.12 -0.4
756,091 - ABZR87_RS03600 0.12 +0.1
756,091 - ABZR87_RS03600 0.12 +0.5
756,091 - ABZR87_RS03600 0.12 +0.7
756,091 - ABZR87_RS03600 0.12 +0.7
756,091 - ABZR87_RS03600 0.12 +0.2
756,091 - ABZR87_RS03600 0.12 -0.3
756,091 - ABZR87_RS03600 0.12 +0.8
756,091 - ABZR87_RS03600 0.12 +1.1
756,091 - ABZR87_RS03600 0.12 -0.6
756,438 + ABZR87_RS03600 0.34 -0.5
756,438 + ABZR87_RS03600 0.34 +0.1
756,439 - ABZR87_RS03600 0.34 -0.0
756,830 - ABZR87_RS03600 0.58 -2.4
756,876 + ABZR87_RS03600 0.61 +0.0
756,877 - ABZR87_RS03600 0.61 -1.8
756,877 - ABZR87_RS03600 0.61 +0.7
756,909 + ABZR87_RS03600 0.63 -0.4
756,909 + ABZR87_RS03600 0.63 +0.6
756,922 - ABZR87_RS03600 0.63 +0.1
757,439 - +0.2
757,471 + +0.6
757,472 - -0.6
757,472 - -0.9
757,532 + -0.3
757,737 + ABZR87_RS03605 0.34 -0.8
757,737 + ABZR87_RS03605 0.34 +0.4
757,738 - ABZR87_RS03605 0.35 +1.0
757,738 - ABZR87_RS03605 0.35 +0.6
757,926 + -0.1
757,926 + -0.2
757,926 + +0.3
757,963 + -0.2
757,963 + +0.7
757,963 + +0.8
757,963 + -0.0
757,963 + +0.1
757,963 + +0.6
757,963 + -0.8
757,963 + -0.2
757,964 - -1.3
757,964 - +0.6
757,964 - +0.3
757,964 - -2.1
757,964 - +2.2
758,059 + -0.5
758,059 + -0.0
758,108 - -0.3
758,156 + -0.6
758,163 + -1.3
758,315 + ABZR87_RS03610 0.31 -1.2
758,315 + ABZR87_RS03610 0.31 -0.3
758,316 - ABZR87_RS03610 0.31 -1.0
758,316 - ABZR87_RS03610 0.31 -0.8
758,399 + ABZR87_RS03610 0.44 -0.2
758,399 + ABZR87_RS03610 0.44 -0.7
758,400 - ABZR87_RS03610 0.44 +0.3

Or see this region's nucleotide sequence