Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03435 and ABZR87_RS03440 are separated by 10 nucleotides ABZR87_RS03440 and ABZR87_RS03445 are separated by 17 nucleotides ABZR87_RS03445 and ABZR87_RS03450 are separated by 37 nucleotides
ABZR87_RS03435: ABZR87_RS03435 - type II secretion system protein GspL, at 716,134 to 717,570
_RS03435
ABZR87_RS03440: ABZR87_RS03440 - type II secretion system protein GspM, at 717,581 to 718,150
_RS03440
ABZR87_RS03445: ABZR87_RS03445 - type II secretion system protein N, at 718,168 to 719,010
_RS03445
ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465
_RS03450
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 717.407 kb on - strand, within ABZR87_RS03435 at 717.533 kb on + strand at 717.569 kb on - strand at 717.569 kb on - strand at 717.749 kb on + strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.750 kb on - strand, within ABZR87_RS03440 at 717.817 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.300 kb on + strand, within ABZR87_RS03445 at 718.301 kb on - strand, within ABZR87_RS03445 at 718.400 kb on + strand, within ABZR87_RS03445 at 718.401 kb on - strand, within ABZR87_RS03445 at 718.713 kb on + strand, within ABZR87_RS03445 at 718.714 kb on - strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.387 kb on + strand, within ABZR87_RS03450 at 719.621 kb on - strand, within ABZR87_RS03450 at 719.627 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.828 kb on - strand, within ABZR87_RS03450 at 719.828 kb on - strand, within ABZR87_RS03450 at 719.857 kb on + strand, within ABZR87_RS03450 at 719.858 kb on - strand, within ABZR87_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 717,407 - ABZR87_RS03435 0.89 -1.7 717,533 + +0.5 717,569 - +0.5 717,569 - -0.7 717,749 + ABZR87_RS03440 0.29 -2.0 717,750 - ABZR87_RS03440 0.30 -0.9 717,750 - ABZR87_RS03440 0.30 -1.0 717,750 - ABZR87_RS03440 0.30 -1.2 717,817 + ABZR87_RS03440 0.41 +0.1 718,082 + ABZR87_RS03440 0.88 +0.5 718,082 + ABZR87_RS03440 0.88 -0.6 718,082 + ABZR87_RS03440 0.88 -1.2 718,083 - ABZR87_RS03440 0.88 -2.2 718,083 - ABZR87_RS03440 0.88 +0.0 718,083 - ABZR87_RS03440 0.88 -0.6 718,083 - ABZR87_RS03440 0.88 -0.3 718,083 - ABZR87_RS03440 0.88 +0.4 718,083 - ABZR87_RS03440 0.88 -1.6 718,300 + ABZR87_RS03445 0.16 -0.9 718,301 - ABZR87_RS03445 0.16 -0.2 718,400 + ABZR87_RS03445 0.28 -3.0 718,401 - ABZR87_RS03445 0.28 -1.2 718,713 + ABZR87_RS03445 0.65 -1.9 718,714 - ABZR87_RS03445 0.65 -0.7 718,751 + ABZR87_RS03445 0.69 -0.6 718,751 + ABZR87_RS03445 0.69 -1.2 718,751 + ABZR87_RS03445 0.69 +0.9 718,751 + ABZR87_RS03445 0.69 -1.3 718,751 + ABZR87_RS03445 0.69 -0.2 718,751 + ABZR87_RS03445 0.69 -1.6 718,752 - ABZR87_RS03445 0.69 -0.4 718,752 - ABZR87_RS03445 0.69 -1.0 718,752 - ABZR87_RS03445 0.69 -0.5 718,789 + ABZR87_RS03445 0.74 -0.6 718,789 + ABZR87_RS03445 0.74 -0.7 718,790 - ABZR87_RS03445 0.74 -0.6 718,790 - ABZR87_RS03445 0.74 +0.1 719,063 + -2.1 719,063 + -0.0 719,063 + -0.7 719,063 + -0.9 719,063 + -0.4 719,063 + -0.8 719,063 + -0.9 719,063 + -1.8 719,064 - -1.3 719,064 - -0.9 719,064 - -0.4 719,064 - +1.1 719,064 - -1.0 719,064 - -0.8 719,064 - +1.1 719,064 - +0.1 719,064 - +0.2 719,387 + ABZR87_RS03450 0.14 -0.5 719,621 - ABZR87_RS03450 0.24 +0.1 719,627 + ABZR87_RS03450 0.24 -1.0 719,827 + ABZR87_RS03450 0.32 -0.8 719,827 + ABZR87_RS03450 0.32 +0.1 719,827 + ABZR87_RS03450 0.32 +0.6 719,827 + ABZR87_RS03450 0.32 -0.8 719,827 + ABZR87_RS03450 0.32 -1.3 719,827 + ABZR87_RS03450 0.32 -0.7 719,827 + ABZR87_RS03450 0.32 -0.7 719,828 - ABZR87_RS03450 0.32 -2.3 719,828 - ABZR87_RS03450 0.32 -0.4 719,857 + ABZR87_RS03450 0.33 -0.8 719,858 - ABZR87_RS03450 0.33 -1.2
Or see this region's nucleotide sequence