Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03295 and ABZR87_RS03300 are separated by 9 nucleotides ABZR87_RS03300 and ABZR87_RS03305 are separated by 162 nucleotides ABZR87_RS03305 and ABZR87_RS03310 are separated by 183 nucleotides
ABZR87_RS03295: ABZR87_RS03295 - xanthine dehydrogenase family protein subunit M, at 694,792 to 695,814
_RS03295
ABZR87_RS03300: ABZR87_RS03300 - 2Fe-2S iron-sulfur cluster-binding protein, at 695,824 to 696,564
_RS03300
ABZR87_RS03305: ABZR87_RS03305 - M20/M25/M40 family metallo-hydrolase, at 696,727 to 698,037
_RS03305
ABZR87_RS03310: ABZR87_RS03310 - DUF1835 domain-containing protein, at 698,221 to 699,015
_RS03310
Position (kb) 696
697
698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.737 kb on - strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.738 kb on + strand at 695.739 kb on - strand at 695.739 kb on - strand at 695.798 kb on + strand at 695.798 kb on + strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.799 kb on - strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.825 kb on + strand at 695.882 kb on + strand at 696.016 kb on + strand, within ABZR87_RS03300 at 696.017 kb on - strand, within ABZR87_RS03300 at 696.053 kb on + strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.339 kb on - strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.354 kb on + strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.355 kb on - strand, within ABZR87_RS03300 at 696.593 kb on + strand at 696.593 kb on + strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.594 kb on - strand at 696.629 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.698 kb on + strand at 696.699 kb on - strand at 696.705 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.728 kb on + strand at 696.729 kb on - strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.785 kb on + strand at 696.786 kb on - strand at 696.786 kb on - strand at 696.786 kb on - strand at 696.818 kb on + strand at 696.818 kb on + strand at 696.818 kb on + strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.819 kb on - strand at 696.965 kb on + strand, within ABZR87_RS03305 at 696.965 kb on + strand, within ABZR87_RS03305 at 696.966 kb on - strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.271 kb on + strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.272 kb on - strand, within ABZR87_RS03305 at 697.505 kb on + strand, within ABZR87_RS03305 at 697.506 kb on - strand, within ABZR87_RS03305 at 697.506 kb on - strand, within ABZR87_RS03305 at 697.593 kb on - strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.646 kb on + strand, within ABZR87_RS03305 at 697.647 kb on - strand, within ABZR87_RS03305 at 697.647 kb on - strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.751 kb on + strand, within ABZR87_RS03305 at 697.752 kb on - strand, within ABZR87_RS03305 at 697.925 kb on + strand at 697.925 kb on + strand at 697.926 kb on - strand at 697.926 kb on - strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.059 kb on + strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.060 kb on - strand at 698.063 kb on + strand at 698.063 kb on + strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.064 kb on - strand at 698.136 kb on - strand at 698.136 kb on - strand at 698.161 kb on + strand at 698.161 kb on + strand at 698.162 kb on - strand at 698.162 kb on - strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.167 kb on + strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.168 kb on - strand at 698.169 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.227 kb on + strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.228 kb on - strand at 698.306 kb on + strand, within ABZR87_RS03310 at 698.312 kb on + strand, within ABZR87_RS03310 at 698.312 kb on + strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.313 kb on - strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.638 kb on + strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.639 kb on - strand, within ABZR87_RS03310 at 698.713 kb on + strand, within ABZR87_RS03310 at 698.714 kb on - strand, within ABZR87_RS03310 at 698.788 kb on + strand, within ABZR87_RS03310 at 698.789 kb on - strand, within ABZR87_RS03310 at 699.013 kb on + strand at 699.013 kb on + strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.014 kb on - strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.021 kb on + strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand at 699.022 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 695,737 - -0.4 695,737 - -0.2 695,737 - -0.2 695,737 - -1.2 695,738 + -0.9 695,738 + -0.2 695,738 + +0.5 695,738 + -1.3 695,738 + +0.0 695,738 + +0.5 695,739 - +1.0 695,739 - +1.3 695,798 + +1.3 695,798 + -0.4 695,799 - +0.5 695,799 - -0.9 695,799 - -0.5 695,825 + +0.5 695,825 + +0.4 695,825 + -0.9 695,882 + -0.7 696,016 + ABZR87_RS03300 0.26 -1.2 696,017 - ABZR87_RS03300 0.26 +0.4 696,053 + ABZR87_RS03300 0.31 +1.0 696,339 - ABZR87_RS03300 0.70 -0.8 696,339 - ABZR87_RS03300 0.70 +0.8 696,339 - ABZR87_RS03300 0.70 +0.9 696,339 - ABZR87_RS03300 0.70 +0.5 696,354 + ABZR87_RS03300 0.72 +0.5 696,354 + ABZR87_RS03300 0.72 +0.5 696,354 + ABZR87_RS03300 0.72 +0.3 696,355 - ABZR87_RS03300 0.72 -1.0 696,355 - ABZR87_RS03300 0.72 +0.0 696,593 + +0.1 696,593 + -0.9 696,594 - -0.2 696,594 - +0.3 696,594 - +0.5 696,629 + +0.5 696,698 + +0.2 696,698 + +1.7 696,698 + +0.4 696,699 - +0.0 696,705 + -0.0 696,728 + -0.4 696,728 + -0.9 696,728 + -1.1 696,728 + -0.7 696,728 + -0.5 696,729 - +1.1 696,785 + +0.2 696,785 + -1.4 696,785 + +0.5 696,786 - +0.4 696,786 - -0.8 696,786 - -0.3 696,818 + +0.1 696,818 + +0.2 696,818 + +0.5 696,819 - +0.1 696,819 - +1.5 696,819 - -0.2 696,819 - -0.1 696,819 - -0.3 696,965 + ABZR87_RS03305 0.18 +0.2 696,965 + ABZR87_RS03305 0.18 -1.1 696,966 - ABZR87_RS03305 0.18 -0.1 697,271 + ABZR87_RS03305 0.41 -0.9 697,271 + ABZR87_RS03305 0.41 -1.6 697,271 + ABZR87_RS03305 0.41 +0.1 697,272 - ABZR87_RS03305 0.42 -0.7 697,272 - ABZR87_RS03305 0.42 -0.1 697,272 - ABZR87_RS03305 0.42 +0.3 697,272 - ABZR87_RS03305 0.42 -0.4 697,505 + ABZR87_RS03305 0.59 -0.0 697,506 - ABZR87_RS03305 0.59 -0.2 697,506 - ABZR87_RS03305 0.59 -0.2 697,593 - ABZR87_RS03305 0.66 -0.2 697,646 + ABZR87_RS03305 0.70 -0.1 697,646 + ABZR87_RS03305 0.70 -0.8 697,646 + ABZR87_RS03305 0.70 +0.4 697,646 + ABZR87_RS03305 0.70 -0.4 697,646 + ABZR87_RS03305 0.70 +0.2 697,646 + ABZR87_RS03305 0.70 +0.2 697,647 - ABZR87_RS03305 0.70 -0.0 697,647 - ABZR87_RS03305 0.70 -0.1 697,751 + ABZR87_RS03305 0.78 -0.8 697,751 + ABZR87_RS03305 0.78 -0.1 697,751 + ABZR87_RS03305 0.78 -2.0 697,752 - ABZR87_RS03305 0.78 +0.2 697,925 + +0.5 697,925 + -0.0 697,926 - +0.3 697,926 - -0.1 698,059 + -1.7 698,059 + -0.2 698,059 + -1.8 698,059 + +0.4 698,060 - -0.7 698,060 - -0.2 698,060 - +0.4 698,060 - -1.0 698,060 - +0.5 698,060 - -1.3 698,060 - -0.8 698,060 - -0.4 698,063 + -0.4 698,063 + -0.5 698,064 - -0.2 698,064 - -0.8 698,064 - +0.4 698,064 - +0.4 698,064 - -1.0 698,136 - +1.5 698,136 - -0.7 698,161 + -0.6 698,161 + +0.4 698,162 - +1.1 698,162 - -0.3 698,167 + -0.2 698,167 + +1.7 698,167 + -2.6 698,167 + -0.2 698,167 + -0.3 698,167 + -1.1 698,167 + -0.3 698,168 - -0.9 698,168 - +1.0 698,168 - -0.2 698,168 - +0.3 698,168 - -0.7 698,169 + -0.8 698,227 + -0.5 698,227 + +0.5 698,227 + +0.7 698,227 + +1.1 698,227 + -0.1 698,227 + +0.4 698,227 + -0.5 698,227 + +0.7 698,227 + +0.2 698,228 - -0.4 698,228 - -0.0 698,228 - +0.3 698,228 - -0.2 698,228 - +1.7 698,228 - -0.5 698,228 - -0.1 698,228 - +0.7 698,228 - -0.5 698,228 - -0.0 698,228 - +0.1 698,306 + ABZR87_RS03310 0.11 -0.2 698,312 + ABZR87_RS03310 0.11 +0.3 698,312 + ABZR87_RS03310 0.11 -0.5 698,313 - ABZR87_RS03310 0.12 +0.4 698,313 - ABZR87_RS03310 0.12 +0.5 698,313 - ABZR87_RS03310 0.12 -0.8 698,638 + ABZR87_RS03310 0.52 +0.5 698,638 + ABZR87_RS03310 0.52 -0.8 698,638 + ABZR87_RS03310 0.52 +0.3 698,638 + ABZR87_RS03310 0.52 -0.6 698,639 - ABZR87_RS03310 0.53 -0.1 698,639 - ABZR87_RS03310 0.53 +0.0 698,639 - ABZR87_RS03310 0.53 -0.3 698,639 - ABZR87_RS03310 0.53 +1.0 698,639 - ABZR87_RS03310 0.53 -0.3 698,639 - ABZR87_RS03310 0.53 +0.3 698,713 + ABZR87_RS03310 0.62 -1.6 698,714 - ABZR87_RS03310 0.62 +0.2 698,788 + ABZR87_RS03310 0.71 -0.3 698,789 - ABZR87_RS03310 0.71 -0.5 699,013 + -0.4 699,013 + -2.0 699,014 - -0.1 699,014 - -1.2 699,014 - -0.3 699,014 - -0.8 699,014 - +0.3 699,014 - +0.2 699,014 - +0.5 699,021 + +0.5 699,021 + -0.3 699,021 + -0.2 699,021 + -0.3 699,021 + -0.4 699,022 - +0.6 699,022 - -0.3 699,022 - +0.0 699,022 - +1.7 699,022 - +0.9
Or see this region's nucleotide sequence