Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02585 and ABZR87_RS02590 are separated by 19 nucleotides ABZR87_RS02590 and ABZR87_RS02595 overlap by 4 nucleotides ABZR87_RS02595 and ABZR87_RS02600 are separated by 138 nucleotides
ABZR87_RS02585: ABZR87_RS02585 - deoxyguanosinetriphosphate triphosphohydrolase, at 549,608 to 550,774
_RS02585
ABZR87_RS02590: ABZR87_RS02590 - 3-dehydroquinate synthase, at 550,794 to 551,900
_RS02590
ABZR87_RS02595: ABZR87_RS02595 - shikimate kinase, at 551,897 to 552,469
_RS02595
ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764
_RS02600
Position (kb)
550
551
552 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 549.819 kb on + strand, within ABZR87_RS02585 at 549.819 kb on + strand, within ABZR87_RS02585 at 549.819 kb on + strand, within ABZR87_RS02585 at 549.820 kb on - strand, within ABZR87_RS02585 at 549.820 kb on - strand, within ABZR87_RS02585 at 549.828 kb on + strand, within ABZR87_RS02585 at 549.829 kb on - strand, within ABZR87_RS02585 at 549.835 kb on + strand, within ABZR87_RS02585 at 549.925 kb on + strand, within ABZR87_RS02585 at 549.925 kb on + strand, within ABZR87_RS02585 at 549.926 kb on - strand, within ABZR87_RS02585 at 549.926 kb on - strand, within ABZR87_RS02585 at 550.139 kb on - strand, within ABZR87_RS02585 at 550.152 kb on + strand, within ABZR87_RS02585 at 550.152 kb on + strand, within ABZR87_RS02585 at 550.152 kb on + strand, within ABZR87_RS02585 at 550.152 kb on + strand, within ABZR87_RS02585 at 550.153 kb on - strand, within ABZR87_RS02585 at 550.153 kb on - strand, within ABZR87_RS02585 at 550.153 kb on - strand, within ABZR87_RS02585 at 550.249 kb on + strand, within ABZR87_RS02585 at 550.249 kb on + strand, within ABZR87_RS02585 at 550.249 kb on + strand, within ABZR87_RS02585 at 550.321 kb on - strand, within ABZR87_RS02585 at 550.381 kb on - strand, within ABZR87_RS02585 at 550.590 kb on + strand, within ABZR87_RS02585 at 550.590 kb on + strand, within ABZR87_RS02585 at 550.590 kb on + strand, within ABZR87_RS02585 at 550.590 kb on + strand, within ABZR87_RS02585 at 550.591 kb on - strand, within ABZR87_RS02585 at 550.591 kb on - strand, within ABZR87_RS02585 at 550.713 kb on + strand at 550.714 kb on - strand at 550.905 kb on + strand, within ABZR87_RS02590 at 550.905 kb on + strand, within ABZR87_RS02590 at 550.905 kb on + strand, within ABZR87_RS02590 at 550.906 kb on - strand, within ABZR87_RS02590 at 550.906 kb on - strand, within ABZR87_RS02590 at 550.906 kb on - strand, within ABZR87_RS02590 at 551.228 kb on + strand, within ABZR87_RS02590 at 551.228 kb on + strand, within ABZR87_RS02590 at 551.228 kb on + strand, within ABZR87_RS02590 at 551.228 kb on + strand, within ABZR87_RS02590 at 551.229 kb on - strand, within ABZR87_RS02590 at 551.314 kb on + strand, within ABZR87_RS02590 at 551.315 kb on - strand, within ABZR87_RS02590 at 551.315 kb on - strand, within ABZR87_RS02590 at 551.396 kb on + strand, within ABZR87_RS02590 at 551.396 kb on + strand, within ABZR87_RS02590 at 551.397 kb on - strand, within ABZR87_RS02590 at 551.397 kb on - strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.548 kb on + strand, within ABZR87_RS02590 at 551.549 kb on - strand, within ABZR87_RS02590 at 551.549 kb on - strand, within ABZR87_RS02590 at 551.549 kb on - strand, within ABZR87_RS02590 at 551.549 kb on - strand, within ABZR87_RS02590 at 551.549 kb on - strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.755 kb on + strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.756 kb on - strand, within ABZR87_RS02590 at 551.852 kb on + strand at 551.894 kb on + strand at 551.894 kb on + strand at 551.894 kb on + strand at 551.895 kb on - strand at 551.895 kb on - strand at 551.895 kb on - strand at 551.983 kb on + strand, within ABZR87_RS02595 at 551.983 kb on + strand, within ABZR87_RS02595 at 551.983 kb on + strand, within ABZR87_RS02595 at 551.984 kb on - strand, within ABZR87_RS02595 at 551.984 kb on - strand, within ABZR87_RS02595 at 551.984 kb on - strand, within ABZR87_RS02595 at 551.984 kb on - strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.986 kb on + strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 551.987 kb on - strand, within ABZR87_RS02595 at 552.045 kb on + strand, within ABZR87_RS02595 at 552.045 kb on + strand, within ABZR87_RS02595 at 552.045 kb on + strand, within ABZR87_RS02595 at 552.142 kb on - strand, within ABZR87_RS02595 at 552.142 kb on - strand, within ABZR87_RS02595 at 552.142 kb on - strand, within ABZR87_RS02595 at 552.142 kb on - strand, within ABZR87_RS02595 at 552.142 kb on - strand, within ABZR87_RS02595 at 552.168 kb on + strand, within ABZR87_RS02595 at 552.168 kb on + strand, within ABZR87_RS02595 at 552.168 kb on + strand, within ABZR87_RS02595 at 552.168 kb on + strand, within ABZR87_RS02595 at 552.168 kb on + strand, within ABZR87_RS02595 at 552.169 kb on - strand, within ABZR87_RS02595 at 552.503 kb on + strand at 552.503 kb on + strand at 552.504 kb on - strand at 552.504 kb on - strand at 552.768 kb on + strand at 552.768 kb on + strand at 552.768 kb on + strand at 552.769 kb on - strand at 552.769 kb on - strand at 552.769 kb on - strand at 552.772 kb on + strand at 552.773 kb on - strand at 552.773 kb on - strand at 552.862 kb on + strand, within ABZR87_RS02600 at 552.863 kb on - strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.866 kb on + strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600 at 552.867 kb on - strand, within ABZR87_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 549,819 + ABZR87_RS02585 0.18 +0.6 549,819 + ABZR87_RS02585 0.18 +0.8 549,819 + ABZR87_RS02585 0.18 +0.3 549,820 - ABZR87_RS02585 0.18 +0.1 549,820 - ABZR87_RS02585 0.18 +0.6 549,828 + ABZR87_RS02585 0.19 -0.1 549,829 - ABZR87_RS02585 0.19 +0.6 549,835 + ABZR87_RS02585 0.19 -0.4 549,925 + ABZR87_RS02585 0.27 +0.2 549,925 + ABZR87_RS02585 0.27 +0.4 549,926 - ABZR87_RS02585 0.27 +0.1 549,926 - ABZR87_RS02585 0.27 +0.4 550,139 - ABZR87_RS02585 0.46 +0.4 550,152 + ABZR87_RS02585 0.47 +0.4 550,152 + ABZR87_RS02585 0.47 -0.3 550,152 + ABZR87_RS02585 0.47 +0.6 550,152 + ABZR87_RS02585 0.47 +0.1 550,153 - ABZR87_RS02585 0.47 -0.0 550,153 - ABZR87_RS02585 0.47 -0.4 550,153 - ABZR87_RS02585 0.47 -1.1 550,249 + ABZR87_RS02585 0.55 +0.5 550,249 + ABZR87_RS02585 0.55 +1.2 550,249 + ABZR87_RS02585 0.55 -1.3 550,321 - ABZR87_RS02585 0.61 -0.7 550,381 - ABZR87_RS02585 0.66 -0.1 550,590 + ABZR87_RS02585 0.84 +1.5 550,590 + ABZR87_RS02585 0.84 +0.5 550,590 + ABZR87_RS02585 0.84 -0.3 550,590 + ABZR87_RS02585 0.84 -0.1 550,591 - ABZR87_RS02585 0.84 -1.2 550,591 - ABZR87_RS02585 0.84 +0.4 550,713 + +0.4 550,714 - +1.2 550,905 + ABZR87_RS02590 0.10 -1.2 550,905 + ABZR87_RS02590 0.10 -1.0 550,905 + ABZR87_RS02590 0.10 -1.3 550,906 - ABZR87_RS02590 0.10 -1.7 550,906 - ABZR87_RS02590 0.10 -2.3 550,906 - ABZR87_RS02590 0.10 -0.3 551,228 + ABZR87_RS02590 0.39 -1.0 551,228 + ABZR87_RS02590 0.39 -0.8 551,228 + ABZR87_RS02590 0.39 -2.2 551,228 + ABZR87_RS02590 0.39 -0.7 551,229 - ABZR87_RS02590 0.39 -1.6 551,314 + ABZR87_RS02590 0.47 -3.3 551,315 - ABZR87_RS02590 0.47 +0.7 551,315 - ABZR87_RS02590 0.47 -0.6 551,396 + ABZR87_RS02590 0.54 -2.0 551,396 + ABZR87_RS02590 0.54 -0.1 551,397 - ABZR87_RS02590 0.54 -2.1 551,397 - ABZR87_RS02590 0.54 -0.7 551,548 + ABZR87_RS02590 0.68 -1.3 551,548 + ABZR87_RS02590 0.68 -2.8 551,548 + ABZR87_RS02590 0.68 -1.4 551,548 + ABZR87_RS02590 0.68 -2.0 551,548 + ABZR87_RS02590 0.68 -1.4 551,548 + ABZR87_RS02590 0.68 -2.5 551,549 - ABZR87_RS02590 0.68 -1.4 551,549 - ABZR87_RS02590 0.68 -1.9 551,549 - ABZR87_RS02590 0.68 -1.9 551,549 - ABZR87_RS02590 0.68 -1.8 551,549 - ABZR87_RS02590 0.68 -1.3 551,755 + ABZR87_RS02590 0.87 -3.6 551,755 + ABZR87_RS02590 0.87 -2.6 551,755 + ABZR87_RS02590 0.87 -0.2 551,755 + ABZR87_RS02590 0.87 -1.1 551,755 + ABZR87_RS02590 0.87 -1.1 551,755 + ABZR87_RS02590 0.87 -1.3 551,755 + ABZR87_RS02590 0.87 -3.9 551,756 - ABZR87_RS02590 0.87 -2.0 551,756 - ABZR87_RS02590 0.87 -0.7 551,756 - ABZR87_RS02590 0.87 +0.2 551,756 - ABZR87_RS02590 0.87 -3.1 551,756 - ABZR87_RS02590 0.87 -1.1 551,756 - ABZR87_RS02590 0.87 -1.3 551,756 - ABZR87_RS02590 0.87 -1.6 551,852 + -2.3 551,894 + -3.1 551,894 + -1.1 551,894 + -0.8 551,895 - +0.8 551,895 - -2.2 551,895 - -1.1 551,983 + ABZR87_RS02595 0.15 +1.7 551,983 + ABZR87_RS02595 0.15 -1.4 551,983 + ABZR87_RS02595 0.15 -1.7 551,984 - ABZR87_RS02595 0.15 +0.1 551,984 - ABZR87_RS02595 0.15 -1.0 551,984 - ABZR87_RS02595 0.15 -0.3 551,984 - ABZR87_RS02595 0.15 -1.3 551,986 + ABZR87_RS02595 0.16 -1.1 551,986 + ABZR87_RS02595 0.16 -0.2 551,986 + ABZR87_RS02595 0.16 -0.4 551,986 + ABZR87_RS02595 0.16 -0.8 551,986 + ABZR87_RS02595 0.16 -1.3 551,986 + ABZR87_RS02595 0.16 -1.4 551,987 - ABZR87_RS02595 0.16 -0.1 551,987 - ABZR87_RS02595 0.16 -0.2 551,987 - ABZR87_RS02595 0.16 -0.8 551,987 - ABZR87_RS02595 0.16 -0.4 551,987 - ABZR87_RS02595 0.16 -0.0 551,987 - ABZR87_RS02595 0.16 -0.4 552,045 + ABZR87_RS02595 0.26 -2.2 552,045 + ABZR87_RS02595 0.26 -3.1 552,045 + ABZR87_RS02595 0.26 -0.6 552,142 - ABZR87_RS02595 0.43 +0.5 552,142 - ABZR87_RS02595 0.43 -3.0 552,142 - ABZR87_RS02595 0.43 -1.5 552,142 - ABZR87_RS02595 0.43 -1.8 552,142 - ABZR87_RS02595 0.43 +1.7 552,168 + ABZR87_RS02595 0.47 -1.3 552,168 + ABZR87_RS02595 0.47 -1.8 552,168 + ABZR87_RS02595 0.47 -3.2 552,168 + ABZR87_RS02595 0.47 -1.4 552,168 + ABZR87_RS02595 0.47 -2.2 552,169 - ABZR87_RS02595 0.47 -1.0 552,503 + +0.4 552,503 + -0.0 552,504 - -1.4 552,504 - -0.9 552,768 + -1.0 552,768 + +1.3 552,768 + +0.0 552,769 - -0.5 552,769 - -1.3 552,769 - -0.3 552,772 + +0.8 552,773 - +1.2 552,773 - -0.8 552,862 + ABZR87_RS02600 0.12 -0.4 552,863 - ABZR87_RS02600 0.12 -0.4 552,866 + ABZR87_RS02600 0.12 -0.7 552,866 + ABZR87_RS02600 0.12 -0.2 552,866 + ABZR87_RS02600 0.12 -0.4 552,866 + ABZR87_RS02600 0.12 -1.7 552,866 + ABZR87_RS02600 0.12 -0.6 552,866 + ABZR87_RS02600 0.12 +0.3 552,866 + ABZR87_RS02600 0.12 -0.0 552,866 + ABZR87_RS02600 0.12 -1.1 552,866 + ABZR87_RS02600 0.12 -0.6 552,866 + ABZR87_RS02600 0.12 -0.2 552,867 - ABZR87_RS02600 0.12 +0.0 552,867 - ABZR87_RS02600 0.12 -0.4 552,867 - ABZR87_RS02600 0.12 -0.0 552,867 - ABZR87_RS02600 0.12 -0.4 552,867 - ABZR87_RS02600 0.12 +0.6 552,867 - ABZR87_RS02600 0.12 +0.5 552,867 - ABZR87_RS02600 0.12 +0.9 552,867 - ABZR87_RS02600 0.12 -0.3 552,867 - ABZR87_RS02600 0.12 -0.7
Or see this region's nucleotide sequence