Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02325

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02315 and ABZR87_RS02320 are separated by 51 nucleotidesABZR87_RS02320 and ABZR87_RS02325 are separated by 0 nucleotidesABZR87_RS02325 and ABZR87_RS02330 are separated by 3 nucleotides ABZR87_RS02315: ABZR87_RS02315 - winged helix DNA-binding domain-containing protein, at 495,609 to 496,739 _RS02315 ABZR87_RS02320: ABZR87_RS02320 - cytochrome o ubiquinol oxidase subunit IV, at 496,791 to 497,159 _RS02320 ABZR87_RS02325: ABZR87_RS02325 - cytochrome o ubiquinol oxidase subunit III, at 497,160 to 497,801 _RS02325 ABZR87_RS02330: ABZR87_RS02330 - cytochrome o ubiquinol oxidase subunit I, at 497,805 to 499,784 _RS02330 Position (kb) 497 498Strain fitness (log2 ratio) -2 -1 0 1 2at 496.254 kb on + strand, within ABZR87_RS02315at 496.255 kb on - strand, within ABZR87_RS02315at 496.290 kb on - strand, within ABZR87_RS02315at 496.339 kb on + strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.521 kb on + strand, within ABZR87_RS02315at 496.521 kb on + strand, within ABZR87_RS02315at 496.522 kb on - strand, within ABZR87_RS02315at 496.522 kb on - strand, within ABZR87_RS02315at 496.522 kb on - strand, within ABZR87_RS02315at 496.792 kb on + strandat 496.792 kb on + strandat 496.792 kb on + strandat 496.793 kb on - strandat 496.793 kb on - strandat 496.793 kb on - strandat 496.793 kb on - strandat 496.820 kb on + strandat 496.821 kb on - strandat 496.821 kb on - strandat 496.930 kb on + strand, within ABZR87_RS02320at 496.930 kb on + strand, within ABZR87_RS02320at 496.930 kb on + strand, within ABZR87_RS02320at 496.931 kb on - strand, within ABZR87_RS02320at 496.931 kb on - strand, within ABZR87_RS02320at 497.161 kb on + strandat 497.162 kb on - strandat 497.179 kb on + strandat 497.179 kb on + strandat 497.179 kb on + strandat 497.180 kb on - strandat 497.180 kb on - strandat 497.180 kb on - strandat 497.367 kb on + strand, within ABZR87_RS02325at 497.527 kb on + strand, within ABZR87_RS02325at 497.527 kb on + strand, within ABZR87_RS02325at 497.528 kb on - strand, within ABZR87_RS02325at 497.528 kb on - strand, within ABZR87_RS02325at 497.572 kb on + strand, within ABZR87_RS02325at 497.572 kb on + strand, within ABZR87_RS02325at 497.573 kb on - strand, within ABZR87_RS02325at 497.660 kb on + strand, within ABZR87_RS02325at 497.661 kb on - strand, within ABZR87_RS02325at 497.680 kb on + strand, within ABZR87_RS02325at 497.681 kb on - strand, within ABZR87_RS02325at 497.784 kb on + strandat 497.785 kb on - strandat 497.785 kb on - strandat 497.806 kb on + strandat 497.806 kb on + strandat 497.834 kb on - strandat 497.872 kb on + strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.873 kb on - strandat 497.876 kb on - strandat 497.876 kb on - strandat 498.031 kb on + strand, within ABZR87_RS02330at 498.043 kb on + strand, within ABZR87_RS02330at 498.136 kb on + strand, within ABZR87_RS02330at 498.137 kb on - strand, within ABZR87_RS02330at 498.137 kb on - strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.173 kb on + strand, within ABZR87_RS02330at 498.329 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.370 kb on + strand, within ABZR87_RS02330at 498.371 kb on - strand, within ABZR87_RS02330at 498.371 kb on - strand, within ABZR87_RS02330at 498.391 kb on + strand, within ABZR87_RS02330at 498.391 kb on + strand, within ABZR87_RS02330at 498.392 kb on - strand, within ABZR87_RS02330at 498.473 kb on - strand, within ABZR87_RS02330at 498.479 kb on + strand, within ABZR87_RS02330at 498.479 kb on + strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.480 kb on - strand, within ABZR87_RS02330at 498.491 kb on - strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.673 kb on + strand, within ABZR87_RS02330at 498.674 kb on - strand, within ABZR87_RS02330

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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496,254 + ABZR87_RS02315 0.57 +0.3
496,255 - ABZR87_RS02315 0.57 +0.2
496,290 - ABZR87_RS02315 0.60 -1.2
496,339 + ABZR87_RS02315 0.65 -0.8
496,340 - ABZR87_RS02315 0.65 -0.8
496,340 - ABZR87_RS02315 0.65 -0.3
496,340 - ABZR87_RS02315 0.65 +1.0
496,340 - ABZR87_RS02315 0.65 +1.8
496,340 - ABZR87_RS02315 0.65 +0.2
496,521 + ABZR87_RS02315 0.81 +0.1
496,521 + ABZR87_RS02315 0.81 -0.7
496,522 - ABZR87_RS02315 0.81 -1.2
496,522 - ABZR87_RS02315 0.81 +0.5
496,522 - ABZR87_RS02315 0.81 +0.7
496,792 + -0.4
496,792 + +0.5
496,792 + -1.6
496,793 - +0.5
496,793 - +0.3
496,793 - -1.1
496,793 - +0.0
496,820 + -0.2
496,821 - -0.9
496,821 - +0.4
496,930 + ABZR87_RS02320 0.38 -0.3
496,930 + ABZR87_RS02320 0.38 +0.7
496,930 + ABZR87_RS02320 0.38 +0.3
496,931 - ABZR87_RS02320 0.38 -0.6
496,931 - ABZR87_RS02320 0.38 -0.0
497,161 + +0.7
497,162 - -0.3
497,179 + -2.3
497,179 + -0.1
497,179 + -1.1
497,180 - -1.2
497,180 - +0.1
497,180 - +0.2
497,367 + ABZR87_RS02325 0.32 -0.7
497,527 + ABZR87_RS02325 0.57 -0.6
497,527 + ABZR87_RS02325 0.57 -2.0
497,528 - ABZR87_RS02325 0.57 +0.2
497,528 - ABZR87_RS02325 0.57 -1.5
497,572 + ABZR87_RS02325 0.64 +0.2
497,572 + ABZR87_RS02325 0.64 -1.0
497,573 - ABZR87_RS02325 0.64 -0.8
497,660 + ABZR87_RS02325 0.78 -0.9
497,661 - ABZR87_RS02325 0.78 -2.7
497,680 + ABZR87_RS02325 0.81 -0.4
497,681 - ABZR87_RS02325 0.81 +0.7
497,784 + -1.4
497,785 - -0.3
497,785 - +0.2
497,806 + +0.0
497,806 + -0.8
497,834 - +0.2
497,872 + +0.4
497,873 - -0.4
497,873 - -0.1
497,873 - -2.3
497,873 - +1.3
497,876 - -0.1
497,876 - -0.8
498,031 + ABZR87_RS02330 0.11 +0.3
498,043 + ABZR87_RS02330 0.12 -0.8
498,136 + ABZR87_RS02330 0.17 -0.3
498,137 - ABZR87_RS02330 0.17 -2.1
498,137 - ABZR87_RS02330 0.17 -1.7
498,173 + ABZR87_RS02330 0.19 -1.1
498,173 + ABZR87_RS02330 0.19 -1.8
498,173 + ABZR87_RS02330 0.19 -0.6
498,329 + ABZR87_RS02330 0.26 -0.8
498,370 + ABZR87_RS02330 0.29 +0.5
498,370 + ABZR87_RS02330 0.29 -0.7
498,370 + ABZR87_RS02330 0.29 +0.0
498,371 - ABZR87_RS02330 0.29 -1.9
498,371 - ABZR87_RS02330 0.29 -0.7
498,391 + ABZR87_RS02330 0.30 -1.8
498,391 + ABZR87_RS02330 0.30 -2.2
498,392 - ABZR87_RS02330 0.30 +0.6
498,473 - ABZR87_RS02330 0.34 +0.3
498,479 + ABZR87_RS02330 0.34 +0.2
498,479 + ABZR87_RS02330 0.34 -1.7
498,480 - ABZR87_RS02330 0.34 -0.3
498,480 - ABZR87_RS02330 0.34 +0.9
498,480 - ABZR87_RS02330 0.34 +0.2
498,491 - ABZR87_RS02330 0.35 +0.1
498,673 + ABZR87_RS02330 0.44 -1.2
498,673 + ABZR87_RS02330 0.44 +0.3
498,673 + ABZR87_RS02330 0.44 -0.7
498,674 - ABZR87_RS02330 0.44 -0.8

Or see this region's nucleotide sequence