Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02285

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02280 and ABZR87_RS02285 are separated by 311 nucleotidesABZR87_RS02285 and ABZR87_RS02290 overlap by 28 nucleotides ABZR87_RS02280: ABZR87_RS02280 - hypothetical protein, at 487,239 to 487,979 _RS02280 ABZR87_RS02285: ABZR87_RS02285 - glucan biosynthesis protein G, at 488,291 to 489,877 _RS02285 ABZR87_RS02290: ABZR87_RS02290 - glucans biosynthesis glucosyltransferase MdoH, at 489,850 to 492,438 _RS02290 Position (kb) 488 489 490Strain fitness (log2 ratio) -3 -2 -1 0 1at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.432 kb on + strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.433 kb on - strand, within ABZR87_RS02280at 487.732 kb on + strand, within ABZR87_RS02280at 487.733 kb on - strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.764 kb on + strand, within ABZR87_RS02280at 487.765 kb on - strand, within ABZR87_RS02280at 488.113 kb on + strandat 488.113 kb on + strandat 488.114 kb on - strandat 488.161 kb on - strandat 488.186 kb on + strandat 488.188 kb on + strandat 488.188 kb on + strandat 488.189 kb on - strandat 488.189 kb on - strandat 488.189 kb on - strandat 488.269 kb on + strandat 488.269 kb on + strandat 488.361 kb on - strandat 488.468 kb on + strand, within ABZR87_RS02285at 488.558 kb on + strand, within ABZR87_RS02285at 488.559 kb on - strand, within ABZR87_RS02285at 488.612 kb on + strand, within ABZR87_RS02285at 488.612 kb on + strand, within ABZR87_RS02285at 488.613 kb on - strand, within ABZR87_RS02285at 488.613 kb on - strand, within ABZR87_RS02285at 488.613 kb on - strand, within ABZR87_RS02285at 488.613 kb on - strand, within ABZR87_RS02285at 488.615 kb on + strand, within ABZR87_RS02285at 488.616 kb on - strand, within ABZR87_RS02285at 488.693 kb on + strand, within ABZR87_RS02285at 488.694 kb on - strand, within ABZR87_RS02285at 488.759 kb on + strand, within ABZR87_RS02285at 488.759 kb on + strand, within ABZR87_RS02285at 488.760 kb on - strand, within ABZR87_RS02285at 488.780 kb on + strand, within ABZR87_RS02285at 488.780 kb on + strand, within ABZR87_RS02285at 488.780 kb on + strand, within ABZR87_RS02285at 488.781 kb on - strand, within ABZR87_RS02285at 488.781 kb on - strand, within ABZR87_RS02285at 488.781 kb on - strand, within ABZR87_RS02285at 488.781 kb on - strand, within ABZR87_RS02285at 488.846 kb on + strand, within ABZR87_RS02285at 488.847 kb on - strand, within ABZR87_RS02285at 488.966 kb on + strand, within ABZR87_RS02285at 488.966 kb on + strand, within ABZR87_RS02285at 488.966 kb on + strand, within ABZR87_RS02285at 488.967 kb on - strand, within ABZR87_RS02285at 488.967 kb on - strand, within ABZR87_RS02285at 488.967 kb on - strand, within ABZR87_RS02285at 489.003 kb on - strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.059 kb on + strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.060 kb on - strand, within ABZR87_RS02285at 489.314 kb on + strand, within ABZR87_RS02285at 489.315 kb on - strand, within ABZR87_RS02285at 489.614 kb on - strand, within ABZR87_RS02285at 489.793 kb on + strandat 489.794 kb on - strandat 489.815 kb on + strandat 489.816 kb on - strandat 489.816 kb on - strandat 489.816 kb on - strandat 489.816 kb on - strandat 489.857 kb on + strandat 489.857 kb on + strandat 489.857 kb on + strandat 489.858 kb on - strandat 489.858 kb on - strandat 489.858 kb on - strandat 489.865 kb on - strandat 489.865 kb on - strandat 489.865 kb on - strandat 489.961 kb on + strandat 489.961 kb on + strandat 489.961 kb on + strandat 489.961 kb on + strandat 489.962 kb on - strandat 490.136 kb on + strand, within ABZR87_RS02290at 490.136 kb on + strand, within ABZR87_RS02290at 490.160 kb on - strand, within ABZR87_RS02290at 490.160 kb on - strand, within ABZR87_RS02290at 490.372 kb on + strand, within ABZR87_RS02290at 490.373 kb on - strand, within ABZR87_RS02290at 490.373 kb on - strand, within ABZR87_RS02290at 490.373 kb on - strand, within ABZR87_RS02290at 490.505 kb on - strand, within ABZR87_RS02290at 490.505 kb on - strand, within ABZR87_RS02290at 490.505 kb on - strand, within ABZR87_RS02290at 490.568 kb on + strand, within ABZR87_RS02290at 490.593 kb on + strand, within ABZR87_RS02290at 490.712 kb on + strand, within ABZR87_RS02290at 490.750 kb on + strand, within ABZR87_RS02290at 490.750 kb on + strand, within ABZR87_RS02290at 490.750 kb on + strand, within ABZR87_RS02290at 490.750 kb on + strand, within ABZR87_RS02290at 490.751 kb on - strand, within ABZR87_RS02290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
487,432 + ABZR87_RS02280 0.26 -0.8
487,432 + ABZR87_RS02280 0.26 -1.1
487,432 + ABZR87_RS02280 0.26 -1.3
487,432 + ABZR87_RS02280 0.26 -0.6
487,432 + ABZR87_RS02280 0.26 +0.2
487,432 + ABZR87_RS02280 0.26 -0.3
487,432 + ABZR87_RS02280 0.26 -0.7
487,432 + ABZR87_RS02280 0.26 -0.4
487,432 + ABZR87_RS02280 0.26 -0.5
487,432 + ABZR87_RS02280 0.26 -0.3
487,432 + ABZR87_RS02280 0.26 +0.3
487,432 + ABZR87_RS02280 0.26 +0.2
487,432 + ABZR87_RS02280 0.26 +1.5
487,432 + ABZR87_RS02280 0.26 -0.4
487,432 + ABZR87_RS02280 0.26 +0.2
487,433 - ABZR87_RS02280 0.26 +0.7
487,433 - ABZR87_RS02280 0.26 -1.6
487,433 - ABZR87_RS02280 0.26 +1.0
487,433 - ABZR87_RS02280 0.26 +1.0
487,433 - ABZR87_RS02280 0.26 -0.1
487,433 - ABZR87_RS02280 0.26 -0.4
487,433 - ABZR87_RS02280 0.26 -0.3
487,732 + ABZR87_RS02280 0.67 -0.3
487,733 - ABZR87_RS02280 0.67 +1.7
487,764 + ABZR87_RS02280 0.71 +1.4
487,764 + ABZR87_RS02280 0.71 -0.7
487,764 + ABZR87_RS02280 0.71 +0.0
487,765 - ABZR87_RS02280 0.71 +0.9
488,113 + +0.5
488,113 + -1.0
488,114 - -2.2
488,161 - -1.8
488,186 + +0.6
488,188 + -0.8
488,188 + +0.7
488,189 - -1.4
488,189 - -1.0
488,189 - -0.8
488,269 + +1.0
488,269 + -0.9
488,361 - -0.4
488,468 + ABZR87_RS02285 0.11 +1.7
488,558 + ABZR87_RS02285 0.17 -2.1
488,559 - ABZR87_RS02285 0.17 -2.5
488,612 + ABZR87_RS02285 0.20 -1.8
488,612 + ABZR87_RS02285 0.20 -1.7
488,613 - ABZR87_RS02285 0.20 -2.6
488,613 - ABZR87_RS02285 0.20 -1.1
488,613 - ABZR87_RS02285 0.20 -0.7
488,613 - ABZR87_RS02285 0.20 -3.2
488,615 + ABZR87_RS02285 0.20 -1.2
488,616 - ABZR87_RS02285 0.20 -1.6
488,693 + ABZR87_RS02285 0.25 -1.3
488,694 - ABZR87_RS02285 0.25 -1.1
488,759 + ABZR87_RS02285 0.29 -0.1
488,759 + ABZR87_RS02285 0.29 -2.0
488,760 - ABZR87_RS02285 0.30 +1.0
488,780 + ABZR87_RS02285 0.31 -2.2
488,780 + ABZR87_RS02285 0.31 -0.6
488,780 + ABZR87_RS02285 0.31 +1.4
488,781 - ABZR87_RS02285 0.31 -1.5
488,781 - ABZR87_RS02285 0.31 -1.3
488,781 - ABZR87_RS02285 0.31 -0.8
488,781 - ABZR87_RS02285 0.31 -1.3
488,846 + ABZR87_RS02285 0.35 -0.3
488,847 - ABZR87_RS02285 0.35 -0.9
488,966 + ABZR87_RS02285 0.43 -1.4
488,966 + ABZR87_RS02285 0.43 -3.0
488,966 + ABZR87_RS02285 0.43 -0.6
488,967 - ABZR87_RS02285 0.43 -0.3
488,967 - ABZR87_RS02285 0.43 -0.4
488,967 - ABZR87_RS02285 0.43 -0.3
489,003 - ABZR87_RS02285 0.45 -1.8
489,059 + ABZR87_RS02285 0.48 +0.3
489,059 + ABZR87_RS02285 0.48 -0.3
489,059 + ABZR87_RS02285 0.48 -2.1
489,059 + ABZR87_RS02285 0.48 -1.6
489,059 + ABZR87_RS02285 0.48 -1.8
489,059 + ABZR87_RS02285 0.48 +0.2
489,059 + ABZR87_RS02285 0.48 -0.8
489,059 + ABZR87_RS02285 0.48 +0.6
489,059 + ABZR87_RS02285 0.48 -1.5
489,059 + ABZR87_RS02285 0.48 -0.1
489,059 + ABZR87_RS02285 0.48 -0.7
489,059 + ABZR87_RS02285 0.48 +0.7
489,060 - ABZR87_RS02285 0.48 -0.4
489,060 - ABZR87_RS02285 0.48 +0.4
489,060 - ABZR87_RS02285 0.48 -2.0
489,060 - ABZR87_RS02285 0.48 -2.1
489,060 - ABZR87_RS02285 0.48 -0.6
489,060 - ABZR87_RS02285 0.48 -1.0
489,060 - ABZR87_RS02285 0.48 +0.5
489,314 + ABZR87_RS02285 0.64 +0.6
489,315 - ABZR87_RS02285 0.65 +0.2
489,614 - ABZR87_RS02285 0.83 -1.2
489,793 + -0.2
489,794 - -1.2
489,815 + -0.1
489,816 - -2.3
489,816 - +0.2
489,816 - -1.9
489,816 - -1.3
489,857 + -1.6
489,857 + -2.6
489,857 + -0.9
489,858 - -0.6
489,858 - -0.6
489,858 - -2.3
489,865 - -1.8
489,865 - +0.3
489,865 - -1.3
489,961 + -0.5
489,961 + -0.5
489,961 + -0.4
489,961 + -0.8
489,962 - -2.7
490,136 + ABZR87_RS02290 0.11 -0.4
490,136 + ABZR87_RS02290 0.11 +0.2
490,160 - ABZR87_RS02290 0.12 -1.6
490,160 - ABZR87_RS02290 0.12 -3.3
490,372 + ABZR87_RS02290 0.20 -0.6
490,373 - ABZR87_RS02290 0.20 -0.4
490,373 - ABZR87_RS02290 0.20 +0.7
490,373 - ABZR87_RS02290 0.20 -0.9
490,505 - ABZR87_RS02290 0.25 -2.2
490,505 - ABZR87_RS02290 0.25 -0.8
490,505 - ABZR87_RS02290 0.25 -1.3
490,568 + ABZR87_RS02290 0.28 -2.1
490,593 + ABZR87_RS02290 0.29 -0.1
490,712 + ABZR87_RS02290 0.33 -0.3
490,750 + ABZR87_RS02290 0.35 -1.1
490,750 + ABZR87_RS02290 0.35 -1.8
490,750 + ABZR87_RS02290 0.35 -0.6
490,750 + ABZR87_RS02290 0.35 -1.3
490,751 - ABZR87_RS02290 0.35 +0.4

Or see this region's nucleotide sequence