Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02210 and ABZR87_RS02215 are separated by 31 nucleotides ABZR87_RS02215 and ABZR87_RS02220 are separated by 411 nucleotides ABZR87_RS02220 and ABZR87_RS02225 are separated by 312 nucleotides
ABZR87_RS02210: ABZR87_RS02210 - lytic transglycosylase domain-containing protein, at 473,879 to 474,352
_RS02210
ABZR87_RS02215: ABZR87_RS02215 - flagellar protein FliT, at 474,384 to 474,761
_RS02215
ABZR87_RS02220: ABZR87_RS02220 - redox-regulated ATPase YchF, at 475,173 to 476,267
_RS02220
ABZR87_RS02225: ABZR87_RS02225 - ATP-binding protein, at 476,580 to 478,868
_RS02225
Position (kb)
475
476
477 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 474.260 kb on + strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.261 kb on - strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.293 kb on + strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.294 kb on - strand, within ABZR87_RS02210 at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.388 kb on + strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.389 kb on - strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.391 kb on + strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.392 kb on - strand at 474.406 kb on + strand at 474.406 kb on + strand at 474.688 kb on + strand, within ABZR87_RS02215 at 474.688 kb on + strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.689 kb on - strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.722 kb on + strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.723 kb on - strand, within ABZR87_RS02215 at 474.809 kb on + strand at 474.809 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.810 kb on - strand at 474.954 kb on + strand at 474.954 kb on + strand at 474.955 kb on - strand at 474.969 kb on + strand at 474.970 kb on - strand at 474.970 kb on - strand at 474.977 kb on - strand at 475.072 kb on - strand at 475.214 kb on + strand at 475.214 kb on + strand at 475.215 kb on - strand at 475.266 kb on + strand at 475.267 kb on - strand at 475.267 kb on - strand at 475.586 kb on + strand, within ABZR87_RS02220 at 475.587 kb on - strand, within ABZR87_RS02220 at 475.611 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.785 kb on + strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.786 kb on - strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.848 kb on + strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 475.849 kb on - strand, within ABZR87_RS02220 at 476.019 kb on + strand, within ABZR87_RS02220 at 476.019 kb on + strand, within ABZR87_RS02220 at 476.019 kb on + strand, within ABZR87_RS02220 at 476.019 kb on + strand, within ABZR87_RS02220 at 476.019 kb on + strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.020 kb on - strand, within ABZR87_RS02220 at 476.040 kb on + strand, within ABZR87_RS02220 at 476.145 kb on + strand, within ABZR87_RS02220 at 476.163 kb on + strand at 476.163 kb on + strand at 476.164 kb on - strand at 476.164 kb on - strand at 476.220 kb on + strand at 476.220 kb on + strand at 476.220 kb on + strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.221 kb on - strand at 476.350 kb on + strand at 476.350 kb on + strand at 476.350 kb on + strand at 476.351 kb on - strand at 476.351 kb on - strand at 476.351 kb on - strand at 476.351 kb on - strand at 476.468 kb on + strand at 476.482 kb on + strand at 476.834 kb on + strand, within ABZR87_RS02225 at 476.834 kb on + strand, within ABZR87_RS02225 at 476.834 kb on + strand, within ABZR87_RS02225 at 476.834 kb on + strand, within ABZR87_RS02225 at 476.834 kb on + strand, within ABZR87_RS02225 at 476.835 kb on - strand, within ABZR87_RS02225 at 476.835 kb on - strand, within ABZR87_RS02225 at 476.835 kb on - strand, within ABZR87_RS02225 at 476.835 kb on - strand, within ABZR87_RS02225 at 476.856 kb on + strand, within ABZR87_RS02225 at 476.856 kb on + strand, within ABZR87_RS02225 at 476.857 kb on - strand, within ABZR87_RS02225 at 476.857 kb on - strand, within ABZR87_RS02225 at 476.858 kb on + strand, within ABZR87_RS02225 at 476.858 kb on + strand, within ABZR87_RS02225 at 476.859 kb on - strand, within ABZR87_RS02225 at 476.982 kb on + strand, within ABZR87_RS02225 at 477.100 kb on - strand, within ABZR87_RS02225 at 477.100 kb on - strand, within ABZR87_RS02225 at 477.156 kb on + strand, within ABZR87_RS02225 at 477.156 kb on + strand, within ABZR87_RS02225 at 477.156 kb on + strand, within ABZR87_RS02225 at 477.156 kb on + strand, within ABZR87_RS02225 at 477.157 kb on - strand, within ABZR87_RS02225 at 477.157 kb on - strand, within ABZR87_RS02225 at 477.157 kb on - strand, within ABZR87_RS02225 at 477.157 kb on - strand, within ABZR87_RS02225 at 477.157 kb on - strand, within ABZR87_RS02225 at 477.218 kb on + strand, within ABZR87_RS02225 at 477.219 kb on + strand, within ABZR87_RS02225 at 477.219 kb on + strand, within ABZR87_RS02225 at 477.220 kb on - strand, within ABZR87_RS02225 at 477.220 kb on - strand, within ABZR87_RS02225 at 477.221 kb on + strand, within ABZR87_RS02225 at 477.221 kb on + strand, within ABZR87_RS02225 at 477.222 kb on - strand, within ABZR87_RS02225 at 477.222 kb on - strand, within ABZR87_RS02225
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 474,260 + ABZR87_RS02210 0.80 +0.9 474,261 - ABZR87_RS02210 0.81 +0.8 474,261 - ABZR87_RS02210 0.81 -0.3 474,293 + ABZR87_RS02210 0.87 +1.3 474,293 + ABZR87_RS02210 0.87 +0.1 474,294 - ABZR87_RS02210 0.88 +0.8 474,294 - ABZR87_RS02210 0.88 +0.4 474,294 - ABZR87_RS02210 0.88 +0.6 474,388 + -0.2 474,388 + -0.1 474,388 + -0.1 474,388 + +1.2 474,389 - -0.1 474,389 - +0.4 474,389 - -1.1 474,389 - +0.8 474,391 + +0.1 474,391 + +0.0 474,391 + +0.6 474,392 - +2.5 474,392 - -0.2 474,392 - -0.1 474,392 - +0.4 474,406 + +0.1 474,406 + -0.3 474,688 + ABZR87_RS02215 0.80 -0.9 474,688 + ABZR87_RS02215 0.80 -0.0 474,689 - ABZR87_RS02215 0.81 +0.8 474,689 - ABZR87_RS02215 0.81 -0.1 474,722 + ABZR87_RS02215 0.89 +0.3 474,722 + ABZR87_RS02215 0.89 +0.4 474,723 - ABZR87_RS02215 0.90 +0.3 474,723 - ABZR87_RS02215 0.90 +0.5 474,723 - ABZR87_RS02215 0.90 -0.3 474,809 + +0.3 474,809 - +0.4 474,810 - +0.6 474,810 - +0.2 474,810 - -0.0 474,954 + -0.0 474,954 + +0.9 474,955 - -1.0 474,969 + -0.1 474,970 - +0.4 474,970 - +0.5 474,977 - +0.1 475,072 - -0.5 475,214 + -0.3 475,214 + -0.9 475,215 - -0.7 475,266 + -0.8 475,267 - -0.7 475,267 - -1.9 475,586 + ABZR87_RS02220 0.38 -1.9 475,587 - ABZR87_RS02220 0.38 -1.0 475,611 + ABZR87_RS02220 0.40 -1.0 475,785 + ABZR87_RS02220 0.56 -3.5 475,785 + ABZR87_RS02220 0.56 -1.0 475,785 + ABZR87_RS02220 0.56 -0.1 475,785 + ABZR87_RS02220 0.56 -3.0 475,785 + ABZR87_RS02220 0.56 -1.4 475,785 + ABZR87_RS02220 0.56 -0.7 475,785 + ABZR87_RS02220 0.56 -1.7 475,785 + ABZR87_RS02220 0.56 +0.0 475,785 + ABZR87_RS02220 0.56 -1.6 475,785 + ABZR87_RS02220 0.56 -1.6 475,785 + ABZR87_RS02220 0.56 -3.7 475,785 + ABZR87_RS02220 0.56 -0.5 475,786 - ABZR87_RS02220 0.56 +0.9 475,786 - ABZR87_RS02220 0.56 +0.6 475,786 - ABZR87_RS02220 0.56 -1.2 475,786 - ABZR87_RS02220 0.56 -1.7 475,786 - ABZR87_RS02220 0.56 -1.3 475,786 - ABZR87_RS02220 0.56 +0.5 475,786 - ABZR87_RS02220 0.56 -0.1 475,786 - ABZR87_RS02220 0.56 -1.6 475,786 - ABZR87_RS02220 0.56 -1.2 475,786 - ABZR87_RS02220 0.56 +0.5 475,786 - ABZR87_RS02220 0.56 -0.2 475,786 - ABZR87_RS02220 0.56 -0.2 475,786 - ABZR87_RS02220 0.56 -1.3 475,848 + ABZR87_RS02220 0.62 -1.8 475,848 + ABZR87_RS02220 0.62 +0.2 475,848 + ABZR87_RS02220 0.62 +0.8 475,848 + ABZR87_RS02220 0.62 -0.2 475,848 + ABZR87_RS02220 0.62 -0.8 475,848 + ABZR87_RS02220 0.62 -0.9 475,848 + ABZR87_RS02220 0.62 -0.6 475,848 + ABZR87_RS02220 0.62 -0.1 475,849 - ABZR87_RS02220 0.62 +0.1 475,849 - ABZR87_RS02220 0.62 -0.6 475,849 - ABZR87_RS02220 0.62 -1.0 475,849 - ABZR87_RS02220 0.62 +0.1 475,849 - ABZR87_RS02220 0.62 -0.5 475,849 - ABZR87_RS02220 0.62 -1.1 476,019 + ABZR87_RS02220 0.77 -1.1 476,019 + ABZR87_RS02220 0.77 -1.2 476,019 + ABZR87_RS02220 0.77 -1.6 476,019 + ABZR87_RS02220 0.77 +1.4 476,019 + ABZR87_RS02220 0.77 -3.1 476,020 - ABZR87_RS02220 0.77 -0.2 476,020 - ABZR87_RS02220 0.77 -1.1 476,020 - ABZR87_RS02220 0.77 -0.4 476,020 - ABZR87_RS02220 0.77 -0.8 476,020 - ABZR87_RS02220 0.77 -0.2 476,020 - ABZR87_RS02220 0.77 -1.0 476,040 + ABZR87_RS02220 0.79 -3.1 476,145 + ABZR87_RS02220 0.89 -0.2 476,163 + -1.7 476,163 + -0.0 476,164 - -0.8 476,164 - -1.4 476,220 + +0.6 476,220 + -3.9 476,220 + -1.5 476,221 - -3.3 476,221 - -0.9 476,221 - -0.2 476,221 - -2.2 476,221 - -1.6 476,221 - -1.9 476,221 - -1.6 476,350 + +0.0 476,350 + -2.1 476,350 + -0.8 476,351 - +0.4 476,351 - -0.5 476,351 - -0.8 476,351 - +0.7 476,468 + -0.8 476,482 + +0.2 476,834 + ABZR87_RS02225 0.11 +0.2 476,834 + ABZR87_RS02225 0.11 +0.7 476,834 + ABZR87_RS02225 0.11 -0.4 476,834 + ABZR87_RS02225 0.11 -1.2 476,834 + ABZR87_RS02225 0.11 +0.4 476,835 - ABZR87_RS02225 0.11 -0.3 476,835 - ABZR87_RS02225 0.11 +0.4 476,835 - ABZR87_RS02225 0.11 +1.1 476,835 - ABZR87_RS02225 0.11 -0.1 476,856 + ABZR87_RS02225 0.12 +0.4 476,856 + ABZR87_RS02225 0.12 -0.1 476,857 - ABZR87_RS02225 0.12 +0.4 476,857 - ABZR87_RS02225 0.12 -0.7 476,858 + ABZR87_RS02225 0.12 +0.0 476,858 + ABZR87_RS02225 0.12 +0.1 476,859 - ABZR87_RS02225 0.12 +0.7 476,982 + ABZR87_RS02225 0.18 +0.5 477,100 - ABZR87_RS02225 0.23 -1.2 477,100 - ABZR87_RS02225 0.23 -0.1 477,156 + ABZR87_RS02225 0.25 -2.1 477,156 + ABZR87_RS02225 0.25 +0.8 477,156 + ABZR87_RS02225 0.25 -0.6 477,156 + ABZR87_RS02225 0.25 +1.3 477,157 - ABZR87_RS02225 0.25 +0.1 477,157 - ABZR87_RS02225 0.25 +0.8 477,157 - ABZR87_RS02225 0.25 +0.2 477,157 - ABZR87_RS02225 0.25 -0.0 477,157 - ABZR87_RS02225 0.25 -0.8 477,218 + ABZR87_RS02225 0.28 -0.6 477,219 + ABZR87_RS02225 0.28 -0.0 477,219 + ABZR87_RS02225 0.28 +0.0 477,220 - ABZR87_RS02225 0.28 +0.1 477,220 - ABZR87_RS02225 0.28 +0.2 477,221 + ABZR87_RS02225 0.28 +0.4 477,221 + ABZR87_RS02225 0.28 -0.8 477,222 - ABZR87_RS02225 0.28 +0.6 477,222 - ABZR87_RS02225 0.28 -0.9
Or see this region's nucleotide sequence