Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02145 and ABZR87_RS02150 overlap by 1 nucleotides ABZR87_RS02150 and ABZR87_RS02155 are separated by 13 nucleotides ABZR87_RS02155 and ABZR87_RS02160 are separated by 1 nucleotides ABZR87_RS02160 and ABZR87_RS02165 are separated by 10 nucleotides
ABZR87_RS02145: ABZR87_RS02145 - aminodeoxychorismate/anthranilate synthase component II, at 460,673 to 461,242
_RS02145
ABZR87_RS02150: ABZR87_RS02150 - lysozyme inhibitor LprI family protein, at 461,242 to 461,679
_RS02150
ABZR87_RS02155: ABZR87_RS02155 - anthranilate phosphoribosyltransferase, at 461,693 to 462,730
_RS02155
ABZR87_RS02160: ABZR87_RS02160 - indole-3-glycerol phosphate synthase TrpC, at 462,732 to 463,535
_RS02160
ABZR87_RS02165: ABZR87_RS02165 - CYTH domain-containing protein, at 463,546 to 464,205
_RS02165
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.694 kb on + strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.695 kb on - strand at 460.705 kb on + strand at 460.705 kb on + strand at 460.705 kb on + strand at 460.706 kb on - strand at 460.706 kb on - strand at 460.706 kb on - strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.709 kb on + strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.710 kb on - strand at 460.724 kb on + strand at 460.724 kb on + strand at 460.724 kb on + strand at 461.051 kb on + strand, within ABZR87_RS02145 at 461.051 kb on + strand, within ABZR87_RS02145 at 461.052 kb on - strand, within ABZR87_RS02145 at 461.101 kb on + strand, within ABZR87_RS02145 at 461.512 kb on + strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.513 kb on - strand, within ABZR87_RS02150 at 461.681 kb on + strand at 461.681 kb on + strand at 461.681 kb on + strand at 461.681 kb on + strand at 461.682 kb on - strand at 461.728 kb on + strand at 461.729 kb on - strand at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.025 kb on + strand, within ABZR87_RS02155 at 462.026 kb on - strand, within ABZR87_RS02155 at 462.447 kb on - strand, within ABZR87_RS02155 at 462.498 kb on + strand, within ABZR87_RS02155 at 462.498 kb on + strand, within ABZR87_RS02155 at 462.499 kb on - strand, within ABZR87_RS02155 at 462.499 kb on - strand, within ABZR87_RS02155 at 462.499 kb on - strand, within ABZR87_RS02155 at 462.499 kb on - strand, within ABZR87_RS02155 at 462.605 kb on + strand, within ABZR87_RS02155 at 462.605 kb on + strand, within ABZR87_RS02155 at 462.606 kb on - strand, within ABZR87_RS02155 at 462.606 kb on - strand, within ABZR87_RS02155 at 462.730 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.993 kb on + strand, within ABZR87_RS02160 at 462.993 kb on + strand, within ABZR87_RS02160 at 462.993 kb on + strand, within ABZR87_RS02160 at 463.063 kb on - strand, within ABZR87_RS02160 at 463.129 kb on - strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.138 kb on - strand, within ABZR87_RS02160 at 463.138 kb on - strand, within ABZR87_RS02160 at 463.577 kb on + strand at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.664 kb on - strand, within ABZR87_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 460,694 + -0.2 460,694 + -0.7 460,694 + -0.6 460,694 + -1.5 460,694 + -1.1 460,694 + -1.1 460,694 + -0.7 460,694 + -0.6 460,695 - -1.5 460,695 - -1.4 460,695 - -0.5 460,695 - -2.8 460,695 - -1.0 460,705 + +0.9 460,705 + -0.6 460,705 + -1.1 460,706 - -1.0 460,706 - +0.8 460,706 - -1.7 460,709 + -0.1 460,709 + -0.8 460,709 + -1.2 460,709 + -0.8 460,709 + -1.8 460,710 - -2.0 460,710 - -1.0 460,710 - -0.8 460,710 - -2.9 460,710 - -1.2 460,710 - -2.5 460,710 - -1.3 460,724 + -1.4 460,724 + -3.4 460,724 + -1.0 461,051 + ABZR87_RS02145 0.66 -0.7 461,051 + ABZR87_RS02145 0.66 -1.9 461,052 - ABZR87_RS02145 0.66 +0.8 461,101 + ABZR87_RS02145 0.75 -1.0 461,512 + ABZR87_RS02150 0.62 +0.7 461,513 - ABZR87_RS02150 0.62 -1.2 461,513 - ABZR87_RS02150 0.62 -0.5 461,513 - ABZR87_RS02150 0.62 -1.4 461,681 + -0.3 461,681 + -0.6 461,681 + -1.7 461,681 + -0.6 461,682 - +0.7 461,728 + -2.0 461,729 - -1.1 462,025 + ABZR87_RS02155 0.32 -2.0 462,025 + ABZR87_RS02155 0.32 -1.3 462,025 + ABZR87_RS02155 0.32 -1.3 462,025 + ABZR87_RS02155 0.32 -1.4 462,026 - ABZR87_RS02155 0.32 -1.2 462,447 - ABZR87_RS02155 0.73 -2.6 462,498 + ABZR87_RS02155 0.78 -3.1 462,498 + ABZR87_RS02155 0.78 -1.1 462,499 - ABZR87_RS02155 0.78 -0.8 462,499 - ABZR87_RS02155 0.78 -1.0 462,499 - ABZR87_RS02155 0.78 -3.0 462,499 - ABZR87_RS02155 0.78 -2.1 462,605 + ABZR87_RS02155 0.88 -2.2 462,605 + ABZR87_RS02155 0.88 -0.8 462,606 - ABZR87_RS02155 0.88 -3.3 462,606 - ABZR87_RS02155 0.88 -1.0 462,730 + -0.9 462,731 + +0.8 462,731 + -0.3 462,731 + -0.6 462,731 + -0.3 462,731 + +0.4 462,732 - +0.5 462,732 - -1.8 462,732 - -1.2 462,732 - -1.4 462,732 - -1.5 462,732 - -1.5 462,732 - -0.4 462,732 - -0.7 462,732 - +0.2 462,732 - -1.3 462,732 - -3.0 462,993 + ABZR87_RS02160 0.32 -2.0 462,993 + ABZR87_RS02160 0.32 -1.8 462,993 + ABZR87_RS02160 0.32 -2.3 463,063 - ABZR87_RS02160 0.41 +0.2 463,129 - ABZR87_RS02160 0.49 -0.7 463,137 + ABZR87_RS02160 0.50 -3.4 463,137 + ABZR87_RS02160 0.50 -2.2 463,137 + ABZR87_RS02160 0.50 -2.6 463,138 - ABZR87_RS02160 0.50 -1.4 463,138 - ABZR87_RS02160 0.50 -1.2 463,577 + -0.1 463,661 - ABZR87_RS02165 0.17 +0.3 463,661 - ABZR87_RS02165 0.17 -0.6 463,661 - ABZR87_RS02165 0.17 -0.7 463,661 - ABZR87_RS02165 0.17 -0.5 463,663 + ABZR87_RS02165 0.18 -0.0 463,663 + ABZR87_RS02165 0.18 +0.1 463,664 - ABZR87_RS02165 0.18 -2.3
Or see this region's nucleotide sequence