Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02130

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS02115 and ABZR87_RS02120 are separated by 74 nucleotidesABZR87_RS02120 and ABZR87_RS02125 are separated by 6 nucleotidesABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotidesABZR87_RS02130 and ABZR87_RS02135 overlap by 4 nucleotides ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452 _RS02115 ABZR87_RS02120: ABZR87_RS02120 - hypothetical protein, at 456,527 to 456,760 _RS02120 ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141 _RS02125 ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000 _RS02130 ABZR87_RS02135: ABZR87_RS02135 - phosphoglycolate phosphatase, at 457,997 to 458,725 _RS02135 Position (kb) 457 458 459Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 456.491 kb on + strandat 456.491 kb on + strandat 456.491 kb on + strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.492 kb on - strandat 456.849 kb on + strand, within ABZR87_RS02125at 456.849 kb on + strand, within ABZR87_RS02125at 456.850 kb on - strand, within ABZR87_RS02125at 456.850 kb on - strand, within ABZR87_RS02125at 456.866 kb on - strand, within ABZR87_RS02125at 456.866 kb on - strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.900 kb on + strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.901 kb on - strand, within ABZR87_RS02125at 456.988 kb on + strand, within ABZR87_RS02125at 456.988 kb on + strand, within ABZR87_RS02125at 456.989 kb on - strand, within ABZR87_RS02125at 456.989 kb on - strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.066 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.131 kb on + strandat 457.132 kb on - strandat 457.132 kb on - strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.228 kb on - strandat 457.228 kb on - strandat 457.228 kb on - strandat 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.265 kb on - strand, within ABZR87_RS02135at 458.265 kb on - strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.297 kb on + strand, within ABZR87_RS02135at 458.297 kb on + strand, within ABZR87_RS02135at 458.298 kb on - strand, within ABZR87_RS02135at 458.298 kb on - strand, within ABZR87_RS02135at 458.433 kb on - strand, within ABZR87_RS02135at 458.472 kb on - strand, within ABZR87_RS02135at 458.594 kb on + strand, within ABZR87_RS02135at 458.594 kb on + strand, within ABZR87_RS02135at 458.595 kb on - strand, within ABZR87_RS02135at 458.595 kb on - strand, within ABZR87_RS02135at 458.600 kb on + strand, within ABZR87_RS02135at 458.601 kb on - strand, within ABZR87_RS02135at 458.617 kb on + strand, within ABZR87_RS02135at 458.617 kb on + strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.643 kb on + strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.817 kb on - strandat 458.990 kb on + strandat 458.990 kb on + strandat 458.991 kb on - strandat 458.991 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
456,491 + +0.0
456,491 + +0.4
456,491 + -0.4
456,492 - -0.4
456,492 - -0.4
456,492 - +0.8
456,492 - -0.4
456,492 - -0.1
456,492 - +1.0
456,849 + ABZR87_RS02125 0.22 +0.0
456,849 + ABZR87_RS02125 0.22 -0.2
456,850 - ABZR87_RS02125 0.22 -1.2
456,850 - ABZR87_RS02125 0.22 -1.1
456,866 - ABZR87_RS02125 0.26 -0.3
456,866 - ABZR87_RS02125 0.26 -0.2
456,900 + ABZR87_RS02125 0.35 -0.0
456,900 + ABZR87_RS02125 0.35 +1.8
456,900 + ABZR87_RS02125 0.35 -0.7
456,900 + ABZR87_RS02125 0.35 +0.2
456,900 + ABZR87_RS02125 0.35 -0.9
456,901 - ABZR87_RS02125 0.36 -0.1
456,901 - ABZR87_RS02125 0.36 +0.1
456,901 - ABZR87_RS02125 0.36 -0.4
456,901 - ABZR87_RS02125 0.36 +0.1
456,988 + ABZR87_RS02125 0.59 +0.9
456,988 + ABZR87_RS02125 0.59 -1.0
456,989 - ABZR87_RS02125 0.59 -0.2
456,989 - ABZR87_RS02125 0.59 +0.4
457,053 + ABZR87_RS02125 0.76 -1.1
457,053 + ABZR87_RS02125 0.76 +0.3
457,053 + ABZR87_RS02125 0.76 -0.1
457,053 + ABZR87_RS02125 0.76 +0.3
457,054 - ABZR87_RS02125 0.77 -0.1
457,054 - ABZR87_RS02125 0.77 +1.1
457,065 + ABZR87_RS02125 0.79 -0.6
457,065 + ABZR87_RS02125 0.79 -1.2
457,066 - ABZR87_RS02125 0.80 +0.2
457,102 - ABZR87_RS02125 0.89 +0.8
457,102 - ABZR87_RS02125 0.89 +0.3
457,131 + -0.0
457,132 - -2.0
457,132 - +0.6
457,154 + +0.8
457,154 + -0.0
457,154 + -1.3
457,154 + -0.6
457,155 - -1.1
457,155 - +0.3
457,155 - -0.5
457,155 - -0.2
457,227 + +0.8
457,227 + -0.2
457,227 + +0.2
457,227 + +0.4
457,228 - -0.1
457,228 - -0.0
457,228 - -1.9
458,153 + ABZR87_RS02135 0.21 +0.2
458,153 + ABZR87_RS02135 0.21 +0.2
458,153 + ABZR87_RS02135 0.21 +0.0
458,153 + ABZR87_RS02135 0.21 -0.6
458,153 + ABZR87_RS02135 0.21 +1.2
458,154 - ABZR87_RS02135 0.22 +0.2
458,154 - ABZR87_RS02135 0.22 +0.1
458,154 - ABZR87_RS02135 0.22 +0.5
458,154 - ABZR87_RS02135 0.22 +1.4
458,154 - ABZR87_RS02135 0.22 +0.3
458,154 - ABZR87_RS02135 0.22 +1.8
458,252 + ABZR87_RS02135 0.35 +3.1
458,252 + ABZR87_RS02135 0.35 -0.4
458,252 + ABZR87_RS02135 0.35 +0.6
458,253 - ABZR87_RS02135 0.35 -0.1
458,253 - ABZR87_RS02135 0.35 -0.5
458,253 - ABZR87_RS02135 0.35 -0.4
458,253 - ABZR87_RS02135 0.35 +0.7
458,264 + ABZR87_RS02135 0.37 -0.7
458,264 + ABZR87_RS02135 0.37 -0.3
458,264 + ABZR87_RS02135 0.37 +0.2
458,264 + ABZR87_RS02135 0.37 -0.2
458,264 + ABZR87_RS02135 0.37 -0.2
458,264 + ABZR87_RS02135 0.37 -0.3
458,264 + ABZR87_RS02135 0.37 -1.1
458,264 + ABZR87_RS02135 0.37 +0.5
458,265 - ABZR87_RS02135 0.37 -0.1
458,265 - ABZR87_RS02135 0.37 +0.0
458,285 + ABZR87_RS02135 0.40 +1.8
458,285 + ABZR87_RS02135 0.40 -1.5
458,285 + ABZR87_RS02135 0.40 +0.4
458,285 + ABZR87_RS02135 0.40 +0.3
458,285 + ABZR87_RS02135 0.40 -1.1
458,286 - ABZR87_RS02135 0.40 +0.5
458,286 - ABZR87_RS02135 0.40 -0.7
458,286 - ABZR87_RS02135 0.40 +0.3
458,289 + ABZR87_RS02135 0.40 -0.5
458,289 + ABZR87_RS02135 0.40 +0.8
458,289 + ABZR87_RS02135 0.40 -0.2
458,289 + ABZR87_RS02135 0.40 +0.5
458,289 + ABZR87_RS02135 0.40 +0.4
458,289 + ABZR87_RS02135 0.40 -0.5
458,289 + ABZR87_RS02135 0.40 +0.1
458,289 + ABZR87_RS02135 0.40 +0.6
458,289 + ABZR87_RS02135 0.40 +0.7
458,289 + ABZR87_RS02135 0.40 -0.4
458,289 + ABZR87_RS02135 0.40 -0.2
458,290 - ABZR87_RS02135 0.40 -0.5
458,290 - ABZR87_RS02135 0.40 +0.7
458,290 - ABZR87_RS02135 0.40 -1.9
458,290 - ABZR87_RS02135 0.40 +0.0
458,290 - ABZR87_RS02135 0.40 +0.7
458,290 - ABZR87_RS02135 0.40 +0.3
458,290 - ABZR87_RS02135 0.40 -2.2
458,290 - ABZR87_RS02135 0.40 +1.0
458,290 - ABZR87_RS02135 0.40 -0.5
458,290 - ABZR87_RS02135 0.40 -0.1
458,290 - ABZR87_RS02135 0.40 +0.0
458,297 + ABZR87_RS02135 0.41 +0.2
458,297 + ABZR87_RS02135 0.41 -0.7
458,298 - ABZR87_RS02135 0.41 -0.3
458,298 - ABZR87_RS02135 0.41 -1.8
458,433 - ABZR87_RS02135 0.60 -0.2
458,472 - ABZR87_RS02135 0.65 +0.1
458,594 + ABZR87_RS02135 0.82 +0.2
458,594 + ABZR87_RS02135 0.82 +0.3
458,595 - ABZR87_RS02135 0.82 +0.7
458,595 - ABZR87_RS02135 0.82 +1.1
458,600 + ABZR87_RS02135 0.83 +0.5
458,601 - ABZR87_RS02135 0.83 -0.7
458,617 + ABZR87_RS02135 0.85 -0.3
458,617 + ABZR87_RS02135 0.85 -0.0
458,618 - ABZR87_RS02135 0.85 -0.4
458,618 - ABZR87_RS02135 0.85 -0.3
458,618 - ABZR87_RS02135 0.85 -3.8
458,618 - ABZR87_RS02135 0.85 +0.9
458,618 - ABZR87_RS02135 0.85 +0.7
458,618 - ABZR87_RS02135 0.85 +0.0
458,618 - ABZR87_RS02135 0.85 +0.5
458,618 - ABZR87_RS02135 0.85 -0.3
458,619 + ABZR87_RS02135 0.85 +0.3
458,619 + ABZR87_RS02135 0.85 -0.2
458,619 + ABZR87_RS02135 0.85 +0.5
458,620 - ABZR87_RS02135 0.85 -0.6
458,620 - ABZR87_RS02135 0.85 +0.2
458,620 - ABZR87_RS02135 0.85 -2.5
458,620 - ABZR87_RS02135 0.85 +0.7
458,641 + ABZR87_RS02135 0.88 -1.3
458,641 + ABZR87_RS02135 0.88 +0.4
458,641 + ABZR87_RS02135 0.88 +0.3
458,641 + ABZR87_RS02135 0.88 -0.9
458,641 + ABZR87_RS02135 0.88 +0.2
458,641 + ABZR87_RS02135 0.88 +0.7
458,641 + ABZR87_RS02135 0.88 +0.1
458,641 + ABZR87_RS02135 0.88 -0.1
458,641 + ABZR87_RS02135 0.88 +1.0
458,641 + ABZR87_RS02135 0.88 -0.7
458,641 + ABZR87_RS02135 0.88 +0.1
458,642 - ABZR87_RS02135 0.88 -1.7
458,642 - ABZR87_RS02135 0.88 -0.3
458,642 - ABZR87_RS02135 0.88 +0.9
458,642 - ABZR87_RS02135 0.88 +0.9
458,642 - ABZR87_RS02135 0.88 +0.2
458,642 - ABZR87_RS02135 0.88 +0.3
458,642 - ABZR87_RS02135 0.88 +0.1
458,642 - ABZR87_RS02135 0.88 -2.3
458,643 + ABZR87_RS02135 0.89 -0.0
458,644 - ABZR87_RS02135 0.89 +1.0
458,644 - ABZR87_RS02135 0.89 -0.2
458,644 - ABZR87_RS02135 0.89 +0.9
458,817 - -1.5
458,990 + -2.3
458,990 + -0.8
458,991 - -1.2
458,991 - +0.5

Or see this region's nucleotide sequence