Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02115 and ABZR87_RS02120 are separated by 74 nucleotides ABZR87_RS02120 and ABZR87_RS02125 are separated by 6 nucleotides ABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotides
ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452
_RS02115
ABZR87_RS02120: ABZR87_RS02120 - hypothetical protein, at 456,527 to 456,760
_RS02120
ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141
_RS02125
ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000
_RS02130
Position (kb) 456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.724 kb on - strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.260 kb on + strand, within ABZR87_RS02115 at 456.261 kb on - strand, within ABZR87_RS02115 at 456.491 kb on + strand at 456.491 kb on + strand at 456.491 kb on + strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.849 kb on + strand, within ABZR87_RS02125 at 456.849 kb on + strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.066 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.131 kb on + strand at 457.132 kb on - strand at 457.132 kb on - strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.228 kb on - strand at 457.228 kb on - strand at 457.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 455,533 + ABZR87_RS02115 0.20 +1.2 455,533 + ABZR87_RS02115 0.20 +0.4 455,533 + ABZR87_RS02115 0.20 -0.2 455,533 + ABZR87_RS02115 0.20 -0.9 455,533 + ABZR87_RS02115 0.20 +1.0 455,533 + ABZR87_RS02115 0.20 +0.5 455,533 + ABZR87_RS02115 0.20 +0.6 455,534 - ABZR87_RS02115 0.20 +0.9 455,534 - ABZR87_RS02115 0.20 +0.5 455,534 - ABZR87_RS02115 0.20 +0.5 455,534 - ABZR87_RS02115 0.20 +0.9 455,632 + ABZR87_RS02115 0.29 +1.2 455,632 + ABZR87_RS02115 0.29 +1.0 455,633 - ABZR87_RS02115 0.29 -1.7 455,633 - ABZR87_RS02115 0.29 +1.2 455,724 - ABZR87_RS02115 0.37 +0.4 455,968 + ABZR87_RS02115 0.58 -0.1 455,968 + ABZR87_RS02115 0.58 +0.0 455,984 - ABZR87_RS02115 0.59 +0.1 455,984 - ABZR87_RS02115 0.59 -0.0 455,984 - ABZR87_RS02115 0.59 +1.6 455,984 - ABZR87_RS02115 0.59 +0.4 456,025 + ABZR87_RS02115 0.63 +1.2 456,025 + ABZR87_RS02115 0.63 -0.7 456,025 + ABZR87_RS02115 0.63 +0.8 456,025 + ABZR87_RS02115 0.63 +0.2 456,025 + ABZR87_RS02115 0.63 -0.5 456,025 + ABZR87_RS02115 0.63 +0.5 456,026 - ABZR87_RS02115 0.63 +0.5 456,026 - ABZR87_RS02115 0.63 +0.5 456,026 - ABZR87_RS02115 0.63 +0.7 456,026 - ABZR87_RS02115 0.63 -0.1 456,026 - ABZR87_RS02115 0.63 -3.0 456,029 - ABZR87_RS02115 0.63 +0.4 456,029 - ABZR87_RS02115 0.63 +1.3 456,260 + ABZR87_RS02115 0.83 -0.2 456,261 - ABZR87_RS02115 0.83 -2.4 456,491 + +0.0 456,491 + +0.4 456,491 + -0.4 456,492 - -0.4 456,492 - -0.4 456,492 - +0.8 456,492 - -0.4 456,492 - -0.1 456,492 - +1.0 456,849 + ABZR87_RS02125 0.22 +0.0 456,849 + ABZR87_RS02125 0.22 -0.2 456,850 - ABZR87_RS02125 0.22 -1.2 456,850 - ABZR87_RS02125 0.22 -1.1 456,866 - ABZR87_RS02125 0.26 -0.3 456,866 - ABZR87_RS02125 0.26 -0.2 456,900 + ABZR87_RS02125 0.35 -0.0 456,900 + ABZR87_RS02125 0.35 +1.8 456,900 + ABZR87_RS02125 0.35 -0.7 456,900 + ABZR87_RS02125 0.35 +0.2 456,900 + ABZR87_RS02125 0.35 -0.9 456,901 - ABZR87_RS02125 0.36 -0.1 456,901 - ABZR87_RS02125 0.36 +0.1 456,901 - ABZR87_RS02125 0.36 -0.4 456,901 - ABZR87_RS02125 0.36 +0.1 456,988 + ABZR87_RS02125 0.59 +0.9 456,988 + ABZR87_RS02125 0.59 -1.0 456,989 - ABZR87_RS02125 0.59 -0.2 456,989 - ABZR87_RS02125 0.59 +0.4 457,053 + ABZR87_RS02125 0.76 -1.1 457,053 + ABZR87_RS02125 0.76 +0.3 457,053 + ABZR87_RS02125 0.76 -0.1 457,053 + ABZR87_RS02125 0.76 +0.3 457,054 - ABZR87_RS02125 0.77 -0.1 457,054 - ABZR87_RS02125 0.77 +1.1 457,065 + ABZR87_RS02125 0.79 -0.6 457,065 + ABZR87_RS02125 0.79 -1.2 457,066 - ABZR87_RS02125 0.80 +0.2 457,102 - ABZR87_RS02125 0.89 +0.8 457,102 - ABZR87_RS02125 0.89 +0.3 457,131 + -0.0 457,132 - -2.0 457,132 - +0.6 457,154 + +0.8 457,154 + -0.0 457,154 + -1.3 457,154 + -0.6 457,155 - -1.1 457,155 - +0.3 457,155 - -0.5 457,155 - -0.2 457,227 + +0.8 457,227 + -0.2 457,227 + +0.2 457,227 + +0.4 457,228 - -0.1 457,228 - -0.0 457,228 - -1.9
Or see this region's nucleotide sequence