Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02065 and ABZR87_RS02070 are separated by 178 nucleotides ABZR87_RS02070 and ABZR87_RS02075 are separated by 114 nucleotides ABZR87_RS02075 and ABZR87_RS02080 are separated by 265 nucleotides ABZR87_RS02080 and ABZR87_RS02085 are separated by 36 nucleotides ABZR87_RS02085 and ABZR87_RS02090 are separated by 60 nucleotides
ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700
_RS02065
ABZR87_RS02070: ABZR87_RS02070 - 5S ribosomal RNA, at 445,879 to 445,991
_RS02070
ABZR87_RS02075: ABZR87_RS02075 - 23S ribosomal RNA, at 446,106 to 448,984
_RS02075
ABZR87_RS02080: ABZR87_RS02080 - tRNA-Ala, at 449,250 to 449,325
_RS02080
ABZR87_RS02085: ABZR87_RS02085 - tRNA-Ile, at 449,362 to 449,438
_RS02085
ABZR87_RS02090: ABZR87_RS02090 - 16S ribosomal RNA, at 449,499 to 451,038
_RS02090
Position (kb) 446
447
448
449 Strain fitness (log2 ratio) -2
-1
0
1 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.356 kb on + strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.506 kb on + strand, within ABZR87_RS02065 at 445.528 kb on - strand, within ABZR87_RS02065 at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.722 kb on + strand at 445.722 kb on + strand at 445.722 kb on + strand at 446.105 kb on + strand at 447.149 kb on + strand, within ABZR87_RS02075 at 447.360 kb on + strand, within ABZR87_RS02075 at 447.623 kb on + strand, within ABZR87_RS02075
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 445,148 - ABZR87_RS02065 0.53 -0.6 445,148 - ABZR87_RS02065 0.53 -1.4 445,148 - ABZR87_RS02065 0.53 +0.2 445,148 - ABZR87_RS02065 0.53 +0.3 445,172 + ABZR87_RS02065 0.55 -0.1 445,172 + ABZR87_RS02065 0.55 -0.4 445,172 + ABZR87_RS02065 0.55 -0.1 445,173 - ABZR87_RS02065 0.56 -0.4 445,173 - ABZR87_RS02065 0.56 +1.0 445,356 + ABZR87_RS02065 0.71 -0.4 445,357 - ABZR87_RS02065 0.71 +0.0 445,357 - ABZR87_RS02065 0.71 -0.8 445,357 - ABZR87_RS02065 0.71 -0.4 445,393 - ABZR87_RS02065 0.74 +0.7 445,393 - ABZR87_RS02065 0.74 -0.7 445,506 + ABZR87_RS02065 0.84 +0.4 445,528 - ABZR87_RS02065 0.85 -1.0 445,623 + +0.9 445,623 + -0.1 445,623 + +1.1 445,623 + +0.1 445,623 + -0.5 445,624 - +0.2 445,624 - -0.0 445,624 - -0.6 445,624 - -1.4 445,624 - +0.0 445,624 - -0.5 445,624 - -0.3 445,624 - +0.1 445,662 + -0.0 445,662 + -0.5 445,662 + -1.0 445,662 + +0.7 445,663 - -1.7 445,663 - +0.6 445,663 - +0.5 445,663 - +0.4 445,663 - +0.0 445,694 + +1.2 445,694 + +0.2 445,694 + -0.1 445,698 + +0.0 445,698 + -0.4 445,698 + -0.4 445,698 + -0.3 445,698 + +0.8 445,698 + -1.4 445,698 + +0.4 445,698 + +0.1 445,698 + -2.2 445,698 + -1.3 445,698 + -1.2 445,698 + -1.3 445,698 + -0.0 445,698 + -0.4 445,698 + -0.3 445,698 + +0.4 445,698 + -2.5 445,699 - -0.9 445,699 - -0.2 445,699 - -0.7 445,699 - -0.2 445,699 - +0.3 445,699 - +0.3 445,699 - +1.1 445,699 - -0.4 445,699 - -0.6 445,703 - +0.0 445,703 - -0.2 445,703 - -0.4 445,703 - +1.0 445,722 + -0.8 445,722 + -0.7 445,722 + +0.8 446,105 + -1.0 447,149 + ABZR87_RS02075 0.36 -1.0 447,360 + ABZR87_RS02075 0.44 -1.0 447,623 + ABZR87_RS02075 0.53 -1.0
Or see this region's nucleotide sequence