Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01745

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01740 and ABZR87_RS01745 are separated by 563 nucleotidesABZR87_RS01745 and ABZR87_RS01750 overlap by 8 nucleotides ABZR87_RS01740: ABZR87_RS01740 - phosphocholine-specific phospholipase C, at 368,726 to 370,885 _RS01740 ABZR87_RS01745: ABZR87_RS01745 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 371,449 to 372,045 _RS01745 ABZR87_RS01750: ABZR87_RS01750 - sigma-54 dependent transcriptional regulator, at 372,038 to 373,663 _RS01750 Position (kb) 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.610 kb on + strand, within ABZR87_RS01740at 370.611 kb on - strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.781 kb on + strandat 370.782 kb on - strandat 370.782 kb on - strandat 370.889 kb on - strandat 370.889 kb on - strandat 370.901 kb on + strandat 370.901 kb on + strandat 371.063 kb on + strandat 371.064 kb on - strandat 371.275 kb on - strandat 371.275 kb on - strandat 371.316 kb on + strandat 371.465 kb on + strandat 371.588 kb on + strand, within ABZR87_RS01745at 371.630 kb on + strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 372.191 kb on - strandat 372.247 kb on - strand, within ABZR87_RS01750at 372.247 kb on - strand, within ABZR87_RS01750at 372.373 kb on + strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.374 kb on - strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.375 kb on + strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.376 kb on - strand, within ABZR87_RS01750at 372.750 kb on + strand, within ABZR87_RS01750at 372.750 kb on + strand, within ABZR87_RS01750at 372.751 kb on - strand, within ABZR87_RS01750at 373.011 kb on + strand, within ABZR87_RS01750

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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370,505 + ABZR87_RS01740 0.82 +0.6
370,505 + ABZR87_RS01740 0.82 +0.2
370,505 + ABZR87_RS01740 0.82 +0.5
370,505 + ABZR87_RS01740 0.82 +0.9
370,505 + ABZR87_RS01740 0.82 +1.2
370,505 + ABZR87_RS01740 0.82 +0.7
370,505 + ABZR87_RS01740 0.82 -0.9
370,505 + ABZR87_RS01740 0.82 -0.6
370,506 - ABZR87_RS01740 0.82 +0.2
370,506 - ABZR87_RS01740 0.82 -0.8
370,506 - ABZR87_RS01740 0.82 -0.3
370,506 - ABZR87_RS01740 0.82 +0.4
370,506 - ABZR87_RS01740 0.82 -0.3
370,506 - ABZR87_RS01740 0.82 -1.1
370,506 - ABZR87_RS01740 0.82 +0.2
370,610 + ABZR87_RS01740 0.87 +0.7
370,611 - ABZR87_RS01740 0.87 +0.3
370,634 + ABZR87_RS01740 0.88 -1.2
370,634 + ABZR87_RS01740 0.88 +1.5
370,635 - ABZR87_RS01740 0.88 +0.2
370,635 - ABZR87_RS01740 0.88 +0.2
370,635 - ABZR87_RS01740 0.88 +0.6
370,781 + -0.4
370,782 - -0.1
370,782 - +0.1
370,889 - -0.4
370,889 - -0.3
370,901 + -0.1
370,901 + -1.3
371,063 + -0.5
371,064 - -1.2
371,275 - -0.4
371,275 - +0.1
371,316 + -0.3
371,465 + -0.0
371,588 + ABZR87_RS01745 0.23 -3.7
371,630 + ABZR87_RS01745 0.30 -2.8
371,631 - ABZR87_RS01745 0.30 -1.6
371,631 - ABZR87_RS01745 0.30 -0.5
371,631 - ABZR87_RS01745 0.30 -2.7
371,631 - ABZR87_RS01745 0.30 +0.2
371,831 + ABZR87_RS01745 0.64 -1.2
371,831 + ABZR87_RS01745 0.64 -2.4
371,831 + ABZR87_RS01745 0.64 +1.6
371,832 - ABZR87_RS01745 0.64 -1.2
371,832 - ABZR87_RS01745 0.64 -3.3
372,191 - +1.5
372,247 - ABZR87_RS01750 0.13 +1.2
372,247 - ABZR87_RS01750 0.13 +1.1
372,373 + ABZR87_RS01750 0.21 +0.3
372,374 - ABZR87_RS01750 0.21 +1.2
372,374 - ABZR87_RS01750 0.21 +1.2
372,374 - ABZR87_RS01750 0.21 +0.8
372,374 - ABZR87_RS01750 0.21 +2.2
372,375 + ABZR87_RS01750 0.21 -0.1
372,375 + ABZR87_RS01750 0.21 +0.4
372,375 + ABZR87_RS01750 0.21 -0.3
372,375 + ABZR87_RS01750 0.21 -0.7
372,375 + ABZR87_RS01750 0.21 +1.5
372,375 + ABZR87_RS01750 0.21 +0.8
372,375 + ABZR87_RS01750 0.21 +0.7
372,376 - ABZR87_RS01750 0.21 +0.5
372,376 - ABZR87_RS01750 0.21 -0.4
372,376 - ABZR87_RS01750 0.21 +1.5
372,376 - ABZR87_RS01750 0.21 +0.4
372,376 - ABZR87_RS01750 0.21 +1.4
372,750 + ABZR87_RS01750 0.44 -0.0
372,750 + ABZR87_RS01750 0.44 +0.5
372,751 - ABZR87_RS01750 0.44 +0.7
373,011 + ABZR87_RS01750 0.60 +1.9

Or see this region's nucleotide sequence