Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01620 and ABZR87_RS01625 overlap by 4 nucleotides ABZR87_RS01625 and ABZR87_RS01630 are separated by 6 nucleotides ABZR87_RS01630 and ABZR87_RS01635 are separated by 78 nucleotides ABZR87_RS01635 and ABZR87_RS01640 are separated by 65 nucleotides
ABZR87_RS01620: ABZR87_RS01620 - chorismate lyase, at 341,118 to 341,696
_RS01620
ABZR87_RS01625: ABZR87_RS01625 - YqiA/YcfP family alpha/beta fold hydrolase, at 341,693 to 342,316
_RS01625
ABZR87_RS01630: ABZR87_RS01630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 342,323 to 343,708
_RS01630
ABZR87_RS01635: ABZR87_RS01635 - hypothetical protein, at 343,787 to 344,461
_RS01635
ABZR87_RS01640: ABZR87_RS01640 - TlpA disulfide reductase family protein, at 344,527 to 345,051
_RS01640
Position (kb) 342
343
344 Strain fitness (log2 ratio) -2
-1
0
1
2 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.425 kb on + strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.426 kb on - strand, within ABZR87_RS01620 at 341.633 kb on - strand, within ABZR87_RS01620 at 341.677 kb on + strand at 341.738 kb on - strand at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.766 kb on + strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.767 kb on - strand, within ABZR87_RS01625 at 341.886 kb on + strand, within ABZR87_RS01625 at 341.887 kb on - strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625 at 341.889 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.000 kb on + strand, within ABZR87_RS01625 at 342.001 kb on - strand, within ABZR87_RS01625 at 342.084 kb on + strand, within ABZR87_RS01625 at 342.084 kb on + strand, within ABZR87_RS01625 at 342.085 kb on - strand, within ABZR87_RS01625 at 342.085 kb on - strand, within ABZR87_RS01625 at 342.210 kb on + strand, within ABZR87_RS01625 at 342.211 kb on - strand, within ABZR87_RS01625 at 342.211 kb on - strand, within ABZR87_RS01625 at 342.316 kb on + strand at 342.317 kb on - strand at 342.317 kb on - strand at 342.317 kb on - strand at 342.726 kb on + strand, within ABZR87_RS01630 at 342.726 kb on + strand, within ABZR87_RS01630 at 342.726 kb on + strand, within ABZR87_RS01630 at 342.726 kb on + strand, within ABZR87_RS01630 at 342.727 kb on - strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.862 kb on + strand, within ABZR87_RS01630 at 342.863 kb on - strand, within ABZR87_RS01630 at 342.868 kb on + strand, within ABZR87_RS01630 at 343.022 kb on + strand, within ABZR87_RS01630 at 343.156 kb on + strand, within ABZR87_RS01630 at 343.156 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.163 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.224 kb on + strand, within ABZR87_RS01630 at 343.225 kb on - strand, within ABZR87_RS01630 at 343.320 kb on + strand, within ABZR87_RS01630 at 343.321 kb on - strand, within ABZR87_RS01630 at 343.321 kb on - strand, within ABZR87_RS01630 at 343.468 kb on + strand, within ABZR87_RS01630 at 343.468 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.515 kb on + strand, within ABZR87_RS01630 at 343.516 kb on - strand, within ABZR87_RS01630 at 343.605 kb on + strand at 343.702 kb on + strand at 343.702 kb on + strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.703 kb on - strand at 343.729 kb on - strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.741 kb on + strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.742 kb on - strand at 343.775 kb on + strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.776 kb on - strand at 343.780 kb on + strand at 343.780 kb on + strand at 343.781 kb on - strand at 343.781 kb on - strand at 343.878 kb on - strand, within ABZR87_RS01635 at 343.985 kb on + strand, within ABZR87_RS01635 at 343.986 kb on - strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.084 kb on + strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.085 kb on - strand, within ABZR87_RS01635 at 344.350 kb on + strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.351 kb on - strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.360 kb on + strand, within ABZR87_RS01635 at 344.361 kb on + strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.361 kb on - strand, within ABZR87_RS01635 at 344.476 kb on + strand at 344.476 kb on + strand at 344.477 kb on - strand at 344.477 kb on - strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.503 kb on + strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.504 kb on - strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.505 kb on + strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.506 kb on - strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.507 kb on + strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.508 kb on - strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.509 kb on + strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.510 kb on - strand at 344.653 kb on + strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640 at 344.654 kb on - strand, within ABZR87_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 341,425 + ABZR87_RS01620 0.53 -2.3 341,425 + ABZR87_RS01620 0.53 +0.4 341,425 + ABZR87_RS01620 0.53 +1.0 341,425 + ABZR87_RS01620 0.53 -0.0 341,425 + ABZR87_RS01620 0.53 +1.1 341,425 + ABZR87_RS01620 0.53 +0.1 341,425 + ABZR87_RS01620 0.53 -0.3 341,425 + ABZR87_RS01620 0.53 -0.1 341,426 - ABZR87_RS01620 0.53 +0.7 341,426 - ABZR87_RS01620 0.53 +0.2 341,426 - ABZR87_RS01620 0.53 -0.9 341,426 - ABZR87_RS01620 0.53 +0.2 341,426 - ABZR87_RS01620 0.53 +0.3 341,633 - ABZR87_RS01620 0.89 +0.2 341,677 + -0.7 341,738 - +0.2 341,766 + ABZR87_RS01625 0.12 -0.2 341,766 + ABZR87_RS01625 0.12 -0.1 341,766 + ABZR87_RS01625 0.12 +0.1 341,767 - ABZR87_RS01625 0.12 +0.3 341,767 - ABZR87_RS01625 0.12 +0.5 341,767 - ABZR87_RS01625 0.12 +1.4 341,767 - ABZR87_RS01625 0.12 +0.2 341,767 - ABZR87_RS01625 0.12 +1.1 341,886 + ABZR87_RS01625 0.31 -0.4 341,887 - ABZR87_RS01625 0.31 -0.1 341,889 + ABZR87_RS01625 0.31 -1.3 341,889 + ABZR87_RS01625 0.31 +1.2 342,000 + ABZR87_RS01625 0.49 -0.1 342,000 + ABZR87_RS01625 0.49 +0.0 342,000 + ABZR87_RS01625 0.49 -0.0 342,000 + ABZR87_RS01625 0.49 +0.2 342,000 + ABZR87_RS01625 0.49 -1.4 342,000 + ABZR87_RS01625 0.49 -0.9 342,000 + ABZR87_RS01625 0.49 +0.4 342,000 + ABZR87_RS01625 0.49 +0.1 342,001 - ABZR87_RS01625 0.49 +0.2 342,084 + ABZR87_RS01625 0.63 +0.2 342,084 + ABZR87_RS01625 0.63 +0.0 342,085 - ABZR87_RS01625 0.63 +0.0 342,085 - ABZR87_RS01625 0.63 +0.0 342,210 + ABZR87_RS01625 0.83 +0.5 342,211 - ABZR87_RS01625 0.83 +1.7 342,211 - ABZR87_RS01625 0.83 -0.6 342,316 + -1.1 342,317 - +0.2 342,317 - +0.5 342,317 - -0.9 342,726 + ABZR87_RS01630 0.29 -1.5 342,726 + ABZR87_RS01630 0.29 -2.5 342,726 + ABZR87_RS01630 0.29 -1.2 342,726 + ABZR87_RS01630 0.29 -2.4 342,727 - ABZR87_RS01630 0.29 -0.5 342,862 + ABZR87_RS01630 0.39 -1.6 342,862 + ABZR87_RS01630 0.39 -0.8 342,862 + ABZR87_RS01630 0.39 -1.7 342,862 + ABZR87_RS01630 0.39 -1.8 342,863 - ABZR87_RS01630 0.39 -0.0 342,868 + ABZR87_RS01630 0.39 -1.7 343,022 + ABZR87_RS01630 0.50 -2.7 343,156 + ABZR87_RS01630 0.60 -1.9 343,156 + ABZR87_RS01630 0.60 -1.6 343,163 + ABZR87_RS01630 0.61 -1.2 343,163 + ABZR87_RS01630 0.61 -0.6 343,163 + ABZR87_RS01630 0.61 -2.0 343,224 + ABZR87_RS01630 0.65 -1.4 343,224 + ABZR87_RS01630 0.65 -2.1 343,224 + ABZR87_RS01630 0.65 -0.6 343,225 - ABZR87_RS01630 0.65 +0.9 343,320 + ABZR87_RS01630 0.72 -1.8 343,321 - ABZR87_RS01630 0.72 -1.7 343,321 - ABZR87_RS01630 0.72 -0.2 343,468 + ABZR87_RS01630 0.83 -1.1 343,468 + ABZR87_RS01630 0.83 -1.5 343,515 + ABZR87_RS01630 0.86 -0.2 343,515 + ABZR87_RS01630 0.86 -1.4 343,515 + ABZR87_RS01630 0.86 -0.3 343,516 - ABZR87_RS01630 0.86 -0.4 343,605 + -0.8 343,702 + +0.1 343,702 + -1.5 343,703 - -0.7 343,703 - -1.3 343,703 - +0.1 343,703 - -0.5 343,729 - -0.4 343,741 + -0.4 343,741 + -1.1 343,741 + +0.4 343,741 + +0.1 343,742 - +0.8 343,742 - +0.6 343,742 - +0.4 343,742 - +0.0 343,742 - -0.6 343,742 - +1.2 343,775 + -0.3 343,776 - +0.7 343,776 - +0.2 343,776 - +0.3 343,776 - -0.4 343,780 + +0.9 343,780 + -0.2 343,781 - -0.3 343,781 - +0.5 343,878 - ABZR87_RS01635 0.13 +0.8 343,985 + ABZR87_RS01635 0.29 +0.1 343,986 - ABZR87_RS01635 0.29 -0.7 344,084 + ABZR87_RS01635 0.44 +0.5 344,084 + ABZR87_RS01635 0.44 +0.0 344,085 - ABZR87_RS01635 0.44 +1.0 344,085 - ABZR87_RS01635 0.44 -0.4 344,085 - ABZR87_RS01635 0.44 -0.2 344,350 + ABZR87_RS01635 0.83 +0.4 344,351 - ABZR87_RS01635 0.84 -0.4 344,351 - ABZR87_RS01635 0.84 -0.0 344,351 - ABZR87_RS01635 0.84 +0.7 344,360 + ABZR87_RS01635 0.85 +1.3 344,360 + ABZR87_RS01635 0.85 -0.6 344,360 + ABZR87_RS01635 0.85 +0.8 344,361 + ABZR87_RS01635 0.85 +0.4 344,361 - ABZR87_RS01635 0.85 +0.6 344,361 - ABZR87_RS01635 0.85 +0.1 344,361 - ABZR87_RS01635 0.85 -0.4 344,361 - ABZR87_RS01635 0.85 -1.2 344,361 - ABZR87_RS01635 0.85 +0.3 344,476 + +0.0 344,476 + -0.2 344,477 - +0.8 344,477 - -0.6 344,503 + +0.8 344,503 + +0.5 344,503 + +0.1 344,503 + +0.1 344,503 + +0.6 344,503 + -0.2 344,504 - +0.0 344,504 - -1.1 344,504 - -0.4 344,504 - +0.3 344,504 - -0.5 344,504 - -0.0 344,504 - +0.5 344,504 - -1.3 344,504 - -0.1 344,504 - +0.7 344,504 - -0.2 344,504 - +0.8 344,504 - +0.5 344,505 + +0.7 344,505 + -0.2 344,505 + -1.3 344,505 + -0.2 344,505 + -0.1 344,505 + +0.3 344,505 + -0.5 344,505 + -0.4 344,505 + +0.7 344,505 + +0.3 344,505 + -0.4 344,505 + +0.4 344,505 + +0.7 344,505 + -0.4 344,505 + -0.4 344,505 + +0.8 344,505 + -0.4 344,505 + +1.0 344,506 - -2.4 344,506 - +1.0 344,506 - +0.2 344,506 - -0.9 344,506 - -2.3 344,506 - +0.1 344,506 - +0.8 344,506 - -0.1 344,506 - +0.8 344,506 - -0.3 344,506 - -1.9 344,506 - -0.9 344,506 - -0.2 344,506 - +1.3 344,506 - +0.6 344,506 - -0.0 344,506 - -0.5 344,506 - -0.4 344,507 + +0.5 344,507 + +0.4 344,507 + +0.6 344,507 + +0.1 344,507 + +0.1 344,507 + +0.6 344,507 + +0.4 344,507 + -0.6 344,507 + -0.7 344,507 + +1.8 344,507 + -0.4 344,507 + +0.1 344,507 + +0.3 344,507 + +0.4 344,507 + -0.2 344,507 + +0.5 344,507 + -0.8 344,507 + +0.4 344,507 + +0.6 344,507 + -0.6 344,507 + +0.0 344,507 + -0.8 344,507 + +1.1 344,507 + +0.6 344,507 + +0.5 344,507 + +0.5 344,507 + +0.3 344,508 - -1.0 344,508 - +1.3 344,508 - -2.7 344,508 - +0.2 344,508 - -1.5 344,508 - +0.0 344,508 - -0.7 344,508 - -0.2 344,508 - -0.0 344,508 - -0.5 344,508 - +0.4 344,508 - +1.5 344,508 - -0.7 344,508 - -0.0 344,508 - +0.5 344,508 - -0.0 344,508 - -0.9 344,508 - -0.3 344,508 - -0.5 344,508 - +0.3 344,509 + +1.0 344,509 + +0.5 344,509 + +0.6 344,509 + -0.6 344,509 + -1.3 344,509 + +0.8 344,509 + -0.0 344,509 + -0.3 344,509 + +0.3 344,509 + +1.0 344,509 + -0.1 344,509 + +0.4 344,509 + +0.2 344,509 + -0.3 344,509 + -0.2 344,510 - -0.6 344,510 - -0.0 344,510 - -0.2 344,510 - +0.2 344,510 - -0.4 344,510 - -1.0 344,510 - -0.0 344,510 - -0.7 344,510 - -0.8 344,510 - -2.0 344,510 - -0.4 344,510 - -0.9 344,510 - -0.5 344,510 - +0.8 344,510 - +0.8 344,510 - -0.6 344,510 - +0.2 344,510 - -0.2 344,510 - -0.8 344,510 - +0.4 344,510 - -0.1 344,510 - -1.7 344,510 - +0.0 344,510 - -0.2 344,510 - -0.4 344,653 + ABZR87_RS01640 0.24 -1.1 344,654 - ABZR87_RS01640 0.24 +0.9 344,654 - ABZR87_RS01640 0.24 -0.5
Or see this region's nucleotide sequence