Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01565

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01555 and ABZR87_RS01560 overlap by 4 nucleotidesABZR87_RS01560 and ABZR87_RS01565 are separated by 473 nucleotidesABZR87_RS01565 and ABZR87_RS01570 are separated by 161 nucleotides ABZR87_RS01555: ABZR87_RS01555 - barstar family protein, at 327,761 to 328,384 _RS01555 ABZR87_RS01560: ABZR87_RS01560 - ribonuclease domain-containing protein, at 328,381 to 328,812 _RS01560 ABZR87_RS01565: ABZR87_RS01565 - NADP-dependent malic enzyme, at 329,286 to 331,631 _RS01565 ABZR87_RS01570: ABZR87_RS01570 - thiamine-phosphate kinase, at 331,793 to 332,878 _RS01570 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 328.294 kb on - strand, within ABZR87_RS01555at 328.294 kb on - strand, within ABZR87_RS01555at 328.390 kb on + strandat 328.409 kb on + strandat 328.409 kb on + strandat 328.410 kb on - strandat 328.410 kb on - strandat 328.410 kb on - strandat 328.425 kb on - strand, within ABZR87_RS01560at 328.425 kb on - strand, within ABZR87_RS01560at 328.425 kb on - strand, within ABZR87_RS01560at 328.425 kb on - strand, within ABZR87_RS01560at 328.425 kb on - strand, within ABZR87_RS01560at 328.427 kb on + strand, within ABZR87_RS01560at 328.428 kb on - strand, within ABZR87_RS01560at 328.428 kb on - strand, within ABZR87_RS01560at 328.521 kb on - strand, within ABZR87_RS01560at 328.521 kb on - strand, within ABZR87_RS01560at 328.556 kb on + strand, within ABZR87_RS01560at 328.557 kb on - strand, within ABZR87_RS01560at 328.557 kb on - strand, within ABZR87_RS01560at 328.557 kb on - strand, within ABZR87_RS01560at 328.586 kb on + strand, within ABZR87_RS01560at 328.587 kb on - strand, within ABZR87_RS01560at 328.774 kb on + strandat 328.775 kb on - strandat 328.775 kb on - strandat 328.775 kb on - strandat 328.884 kb on + strandat 328.885 kb on - strandat 328.885 kb on - strandat 329.354 kb on + strandat 329.355 kb on - strandat 329.449 kb on + strandat 329.449 kb on + strandat 329.449 kb on + strandat 329.449 kb on + strandat 329.449 kb on + strandat 329.449 kb on + strandat 329.450 kb on - strandat 329.450 kb on - strandat 329.450 kb on - strandat 329.450 kb on - strandat 329.450 kb on - strandat 329.450 kb on - strandat 329.830 kb on + strand, within ABZR87_RS01565at 329.866 kb on + strand, within ABZR87_RS01565at 329.866 kb on + strand, within ABZR87_RS01565at 329.885 kb on + strand, within ABZR87_RS01565at 329.885 kb on + strand, within ABZR87_RS01565at 329.885 kb on + strand, within ABZR87_RS01565at 329.886 kb on - strand, within ABZR87_RS01565at 329.886 kb on - strand, within ABZR87_RS01565at 329.886 kb on - strand, within ABZR87_RS01565at 329.886 kb on - strand, within ABZR87_RS01565at 329.886 kb on - strand, within ABZR87_RS01565at 330.019 kb on + strand, within ABZR87_RS01565at 330.019 kb on + strand, within ABZR87_RS01565at 330.019 kb on + strand, within ABZR87_RS01565at 330.019 kb on + strand, within ABZR87_RS01565at 330.019 kb on + strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.020 kb on - strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.022 kb on + strand, within ABZR87_RS01565at 330.023 kb on - strand, within ABZR87_RS01565at 330.023 kb on - strand, within ABZR87_RS01565at 330.023 kb on - strand, within ABZR87_RS01565at 330.034 kb on + strand, within ABZR87_RS01565at 330.034 kb on + strand, within ABZR87_RS01565at 330.298 kb on + strand, within ABZR87_RS01565at 330.298 kb on + strand, within ABZR87_RS01565at 330.299 kb on - strand, within ABZR87_RS01565at 330.299 kb on - strand, within ABZR87_RS01565at 330.325 kb on + strand, within ABZR87_RS01565at 330.326 kb on - strand, within ABZR87_RS01565at 330.439 kb on + strand, within ABZR87_RS01565at 330.439 kb on + strand, within ABZR87_RS01565at 330.439 kb on + strand, within ABZR87_RS01565at 330.439 kb on + strand, within ABZR87_RS01565at 330.440 kb on - strand, within ABZR87_RS01565at 330.440 kb on - strand, within ABZR87_RS01565at 330.440 kb on - strand, within ABZR87_RS01565at 330.440 kb on - strand, within ABZR87_RS01565at 330.440 kb on - strand, within ABZR87_RS01565at 330.631 kb on + strand, within ABZR87_RS01565at 330.631 kb on + strand, within ABZR87_RS01565at 330.638 kb on + strand, within ABZR87_RS01565at 330.827 kb on + strand, within ABZR87_RS01565at 330.827 kb on + strand, within ABZR87_RS01565at 330.828 kb on - strand, within ABZR87_RS01565at 330.828 kb on - strand, within ABZR87_RS01565at 330.828 kb on - strand, within ABZR87_RS01565at 330.828 kb on - strand, within ABZR87_RS01565at 330.889 kb on - strand, within ABZR87_RS01565at 330.892 kb on + strand, within ABZR87_RS01565at 330.892 kb on + strand, within ABZR87_RS01565at 330.893 kb on - strand, within ABZR87_RS01565at 331.073 kb on + strand, within ABZR87_RS01565at 331.390 kb on + strand, within ABZR87_RS01565at 331.390 kb on + strand, within ABZR87_RS01565at 331.390 kb on + strand, within ABZR87_RS01565at 331.391 kb on - strand, within ABZR87_RS01565at 331.454 kb on - strandat 331.616 kb on + strandat 331.616 kb on + strandat 331.643 kb on - strandat 331.643 kb on - strandat 331.717 kb on + strandat 331.717 kb on + strandat 331.717 kb on + strandat 331.717 kb on + strandat 331.718 kb on - strandat 331.718 kb on - strandat 331.747 kb on - strandat 331.749 kb on - strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.792 kb on + strandat 331.793 kb on - strandat 331.806 kb on - strandat 331.810 kb on + strandat 331.810 kb on + strandat 331.811 kb on - strandat 331.851 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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328,294 - ABZR87_RS01555 0.85 +2.4
328,294 - ABZR87_RS01555 0.85 +1.2
328,390 + +0.4
328,409 + +1.6
328,409 + +1.1
328,410 - +0.2
328,410 - +0.4
328,410 - +0.2
328,425 - ABZR87_RS01560 0.10 -0.7
328,425 - ABZR87_RS01560 0.10 -0.1
328,425 - ABZR87_RS01560 0.10 +0.7
328,425 - ABZR87_RS01560 0.10 +0.8
328,425 - ABZR87_RS01560 0.10 +0.3
328,427 + ABZR87_RS01560 0.11 +1.8
328,428 - ABZR87_RS01560 0.11 -0.6
328,428 - ABZR87_RS01560 0.11 +0.9
328,521 - ABZR87_RS01560 0.32 +0.2
328,521 - ABZR87_RS01560 0.32 +0.5
328,556 + ABZR87_RS01560 0.41 +3.1
328,557 - ABZR87_RS01560 0.41 +0.2
328,557 - ABZR87_RS01560 0.41 +1.1
328,557 - ABZR87_RS01560 0.41 +0.2
328,586 + ABZR87_RS01560 0.47 +0.8
328,587 - ABZR87_RS01560 0.48 -2.1
328,774 + -0.1
328,775 - +0.8
328,775 - +0.8
328,775 - -0.2
328,884 + +1.1
328,885 - +0.8
328,885 - +0.6
329,354 + +0.1
329,355 - +0.2
329,449 + +0.6
329,449 + +0.2
329,449 + +0.1
329,449 + -0.8
329,449 + -0.4
329,449 + -1.1
329,450 - -1.2
329,450 - +0.3
329,450 - +0.3
329,450 - +1.8
329,450 - -1.4
329,450 - -2.1
329,830 + ABZR87_RS01565 0.23 -0.0
329,866 + ABZR87_RS01565 0.25 +0.6
329,866 + ABZR87_RS01565 0.25 -2.0
329,885 + ABZR87_RS01565 0.26 +0.1
329,885 + ABZR87_RS01565 0.26 -1.4
329,885 + ABZR87_RS01565 0.26 -0.8
329,886 - ABZR87_RS01565 0.26 -0.2
329,886 - ABZR87_RS01565 0.26 +0.6
329,886 - ABZR87_RS01565 0.26 -1.2
329,886 - ABZR87_RS01565 0.26 -1.2
329,886 - ABZR87_RS01565 0.26 +0.2
330,019 + ABZR87_RS01565 0.31 +0.8
330,019 + ABZR87_RS01565 0.31 -0.5
330,019 + ABZR87_RS01565 0.31 +1.3
330,019 + ABZR87_RS01565 0.31 +1.0
330,019 + ABZR87_RS01565 0.31 -0.2
330,020 - ABZR87_RS01565 0.31 +0.5
330,020 - ABZR87_RS01565 0.31 +0.7
330,020 - ABZR87_RS01565 0.31 +1.2
330,020 - ABZR87_RS01565 0.31 -1.6
330,020 - ABZR87_RS01565 0.31 -1.1
330,020 - ABZR87_RS01565 0.31 -1.4
330,020 - ABZR87_RS01565 0.31 -0.1
330,022 + ABZR87_RS01565 0.31 -0.4
330,022 + ABZR87_RS01565 0.31 +0.1
330,022 + ABZR87_RS01565 0.31 -1.4
330,022 + ABZR87_RS01565 0.31 +0.7
330,022 + ABZR87_RS01565 0.31 -0.5
330,022 + ABZR87_RS01565 0.31 +0.7
330,022 + ABZR87_RS01565 0.31 +0.5
330,022 + ABZR87_RS01565 0.31 -0.7
330,022 + ABZR87_RS01565 0.31 +0.2
330,023 - ABZR87_RS01565 0.31 -1.5
330,023 - ABZR87_RS01565 0.31 -0.1
330,023 - ABZR87_RS01565 0.31 -1.2
330,034 + ABZR87_RS01565 0.32 -0.1
330,034 + ABZR87_RS01565 0.32 -0.2
330,298 + ABZR87_RS01565 0.43 -0.7
330,298 + ABZR87_RS01565 0.43 -1.4
330,299 - ABZR87_RS01565 0.43 -0.0
330,299 - ABZR87_RS01565 0.43 +0.0
330,325 + ABZR87_RS01565 0.44 -0.1
330,326 - ABZR87_RS01565 0.44 -0.4
330,439 + ABZR87_RS01565 0.49 -0.9
330,439 + ABZR87_RS01565 0.49 +0.1
330,439 + ABZR87_RS01565 0.49 -0.7
330,439 + ABZR87_RS01565 0.49 -1.7
330,440 - ABZR87_RS01565 0.49 +0.8
330,440 - ABZR87_RS01565 0.49 +0.3
330,440 - ABZR87_RS01565 0.49 +0.2
330,440 - ABZR87_RS01565 0.49 +0.6
330,440 - ABZR87_RS01565 0.49 -0.9
330,631 + ABZR87_RS01565 0.57 +0.0
330,631 + ABZR87_RS01565 0.57 -0.7
330,638 + ABZR87_RS01565 0.58 +1.0
330,827 + ABZR87_RS01565 0.66 +0.6
330,827 + ABZR87_RS01565 0.66 +0.2
330,828 - ABZR87_RS01565 0.66 +1.2
330,828 - ABZR87_RS01565 0.66 +0.9
330,828 - ABZR87_RS01565 0.66 +0.1
330,828 - ABZR87_RS01565 0.66 +0.6
330,889 - ABZR87_RS01565 0.68 -0.1
330,892 + ABZR87_RS01565 0.68 +0.2
330,892 + ABZR87_RS01565 0.68 +0.8
330,893 - ABZR87_RS01565 0.68 -0.9
331,073 + ABZR87_RS01565 0.76 -1.2
331,390 + ABZR87_RS01565 0.90 +0.0
331,390 + ABZR87_RS01565 0.90 -0.0
331,390 + ABZR87_RS01565 0.90 -0.0
331,391 - ABZR87_RS01565 0.90 +0.5
331,454 - -1.1
331,616 + -0.2
331,616 + -0.2
331,643 - +0.1
331,643 - -0.2
331,717 + +1.0
331,717 + -1.0
331,717 + -0.6
331,717 + -3.0
331,718 - -0.1
331,718 - +0.1
331,747 - +0.3
331,749 - +1.3
331,792 + -0.1
331,792 + -0.4
331,792 + -0.5
331,792 + -0.0
331,792 + -1.2
331,792 + -0.4
331,793 - +0.1
331,806 - -0.1
331,810 + +0.2
331,810 + +0.2
331,811 - +1.0
331,851 - +0.2

Or see this region's nucleotide sequence