Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01545

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotidesABZR87_RS01545 and ABZR87_RS01550 are separated by 33 nucleotides ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028 _RS01540 ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615 _RS01545 ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659 _RS01550 Position (kb) 325 326 327Strain fitness (log2 ratio) -1 0 1at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.544 kb on - strand, within ABZR87_RS01540at 325.140 kb on + strandat 325.140 kb on + strandat 325.140 kb on + strandat 325.141 kb on - strandat 325.383 kb on + strand, within ABZR87_RS01545at 325.383 kb on + strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.866 kb on + strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.922 kb on - strand, within ABZR87_RS01545at 326.029 kb on - strand, within ABZR87_RS01545at 326.433 kb on + strand, within ABZR87_RS01545at 326.433 kb on + strand, within ABZR87_RS01545at 326.434 kb on - strand, within ABZR87_RS01545at 326.434 kb on - strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.445 kb on + strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.446 kb on - strand, within ABZR87_RS01545at 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.648 kb on + strandat 326.649 kb on - strandat 326.649 kb on - strandat 326.707 kb on + strandat 326.707 kb on + strandat 326.975 kb on + strand, within ABZR87_RS01550at 326.975 kb on + strand, within ABZR87_RS01550at 326.975 kb on + strand, within ABZR87_RS01550at 326.976 kb on - strand, within ABZR87_RS01550at 327.054 kb on + strand, within ABZR87_RS01550at 327.055 kb on - strand, within ABZR87_RS01550at 327.198 kb on + strand, within ABZR87_RS01550at 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.579 kb on + strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.580 kb on - strandat 327.585 kb on + strandat 327.585 kb on + strandat 327.586 kb on - strandat 327.586 kb on - strandat 327.586 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
324,357 + ABZR87_RS01540 0.33 +0.6
324,357 + ABZR87_RS01540 0.33 +1.4
324,357 + ABZR87_RS01540 0.33 +0.1
324,357 + ABZR87_RS01540 0.33 -0.3
324,358 - ABZR87_RS01540 0.33 -0.6
324,358 - ABZR87_RS01540 0.33 +0.4
324,358 - ABZR87_RS01540 0.33 -0.7
324,358 - ABZR87_RS01540 0.33 -0.8
324,544 - ABZR87_RS01540 0.52 -0.2
325,140 + +0.6
325,140 + -1.2
325,140 + -0.7
325,141 - +0.0
325,383 + ABZR87_RS01545 0.19 -0.6
325,383 + ABZR87_RS01545 0.19 +0.5
325,384 - ABZR87_RS01545 0.19 -1.2
325,384 - ABZR87_RS01545 0.19 +0.2
325,384 - ABZR87_RS01545 0.19 +0.3
325,713 + ABZR87_RS01545 0.41 -0.9
325,713 + ABZR87_RS01545 0.41 -0.2
325,713 + ABZR87_RS01545 0.41 -0.1
325,713 + ABZR87_RS01545 0.41 +0.0
325,714 - ABZR87_RS01545 0.41 +0.3
325,714 - ABZR87_RS01545 0.41 +0.4
325,714 - ABZR87_RS01545 0.41 -0.2
325,740 + ABZR87_RS01545 0.43 -0.0
325,740 + ABZR87_RS01545 0.43 +0.1
325,741 - ABZR87_RS01545 0.43 -0.6
325,741 - ABZR87_RS01545 0.43 +0.2
325,866 + ABZR87_RS01545 0.51 -0.2
325,867 - ABZR87_RS01545 0.51 -0.7
325,867 - ABZR87_RS01545 0.51 +0.0
325,872 + ABZR87_RS01545 0.51 -0.8
325,872 + ABZR87_RS01545 0.51 +0.7
325,922 - ABZR87_RS01545 0.55 +0.5
326,029 - ABZR87_RS01545 0.62 -0.1
326,433 + ABZR87_RS01545 0.88 +0.7
326,433 + ABZR87_RS01545 0.88 -1.6
326,434 - ABZR87_RS01545 0.88 -1.0
326,434 - ABZR87_RS01545 0.88 -0.5
326,445 + ABZR87_RS01545 0.89 +1.4
326,445 + ABZR87_RS01545 0.89 -0.8
326,445 + ABZR87_RS01545 0.89 +0.6
326,446 - ABZR87_RS01545 0.89 +0.5
326,446 - ABZR87_RS01545 0.89 +0.3
326,446 - ABZR87_RS01545 0.89 -0.6
326,648 + -0.1
326,648 + +0.7
326,648 + -0.2
326,648 + +0.1
326,648 + +0.2
326,649 - +0.4
326,649 - +1.3
326,707 + -0.0
326,707 + -0.3
326,975 + ABZR87_RS01550 0.32 -0.1
326,975 + ABZR87_RS01550 0.32 +0.6
326,975 + ABZR87_RS01550 0.32 +0.3
326,976 - ABZR87_RS01550 0.32 +0.6
327,054 + ABZR87_RS01550 0.40 +1.1
327,055 - ABZR87_RS01550 0.40 -0.7
327,198 + ABZR87_RS01550 0.54 +1.0
327,579 + +1.0
327,579 + +0.4
327,579 + -0.3
327,579 + +0.1
327,579 + -0.8
327,579 + +0.2
327,579 + -0.0
327,579 + +1.1
327,579 + +0.7
327,579 + +0.2
327,579 + +0.6
327,579 + +0.1
327,580 - -0.0
327,580 - -0.1
327,580 - -1.1
327,580 - -0.1
327,580 - +0.1
327,580 - +0.8
327,585 + +0.3
327,585 + +0.8
327,586 - +0.4
327,586 - +0.3
327,586 - +0.4

Or see this region's nucleotide sequence