Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01540

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01530 and ABZR87_RS01535 are separated by 2 nucleotidesABZR87_RS01535 and ABZR87_RS01540 are separated by 53 nucleotidesABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotides ABZR87_RS01530: ABZR87_RS01530 - dihydrodipicolinate synthase family protein, at 322,100 to 323,029 _RS01530 ABZR87_RS01535: ABZR87_RS01535 - Gfo/Idh/MocA family oxidoreductase, at 323,032 to 323,970 _RS01535 ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028 _RS01540 ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615 _RS01545 Position (kb) 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1at 323.182 kb on + strand, within ABZR87_RS01535at 323.182 kb on + strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.183 kb on - strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.376 kb on + strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.377 kb on - strand, within ABZR87_RS01535at 323.848 kb on + strand, within ABZR87_RS01535at 323.849 kb on - strand, within ABZR87_RS01535at 323.984 kb on + strandat 323.984 kb on + strandat 323.984 kb on + strandat 323.984 kb on + strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.985 kb on - strandat 323.988 kb on + strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strandat 323.989 kb on - strandat 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.357 kb on + strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.358 kb on - strand, within ABZR87_RS01540at 324.544 kb on - strand, within ABZR87_RS01540at 325.140 kb on + strandat 325.140 kb on + strandat 325.140 kb on + strandat 325.141 kb on - strandat 325.383 kb on + strand, within ABZR87_RS01545at 325.383 kb on + strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.384 kb on - strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.713 kb on + strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.714 kb on - strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.740 kb on + strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.741 kb on - strand, within ABZR87_RS01545at 325.866 kb on + strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.867 kb on - strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.872 kb on + strand, within ABZR87_RS01545at 325.922 kb on - strand, within ABZR87_RS01545

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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323,182 + ABZR87_RS01535 0.16 -0.4
323,182 + ABZR87_RS01535 0.16 -0.7
323,183 - ABZR87_RS01535 0.16 +1.6
323,183 - ABZR87_RS01535 0.16 -0.5
323,183 - ABZR87_RS01535 0.16 +0.4
323,376 + ABZR87_RS01535 0.37 +0.3
323,376 + ABZR87_RS01535 0.37 +0.2
323,376 + ABZR87_RS01535 0.37 +0.2
323,376 + ABZR87_RS01535 0.37 -0.6
323,376 + ABZR87_RS01535 0.37 -0.3
323,376 + ABZR87_RS01535 0.37 -0.1
323,377 - ABZR87_RS01535 0.37 -0.4
323,377 - ABZR87_RS01535 0.37 +0.4
323,377 - ABZR87_RS01535 0.37 -0.2
323,377 - ABZR87_RS01535 0.37 +0.6
323,848 + ABZR87_RS01535 0.87 +0.0
323,849 - ABZR87_RS01535 0.87 -1.1
323,984 + +1.0
323,984 + -0.6
323,984 + +0.0
323,984 + +0.2
323,985 - -0.8
323,985 - +0.4
323,985 - +0.0
323,985 - -0.7
323,985 - -0.8
323,985 - -0.5
323,988 + -2.9
323,989 - +0.3
323,989 - -0.5
323,989 - -1.0
323,989 - +0.0
323,989 - -0.4
324,357 + ABZR87_RS01540 0.33 +0.6
324,357 + ABZR87_RS01540 0.33 +1.4
324,357 + ABZR87_RS01540 0.33 +0.1
324,357 + ABZR87_RS01540 0.33 -0.3
324,358 - ABZR87_RS01540 0.33 -0.6
324,358 - ABZR87_RS01540 0.33 +0.4
324,358 - ABZR87_RS01540 0.33 -0.7
324,358 - ABZR87_RS01540 0.33 -0.8
324,544 - ABZR87_RS01540 0.52 -0.2
325,140 + +0.6
325,140 + -1.2
325,140 + -0.7
325,141 - +0.0
325,383 + ABZR87_RS01545 0.19 -0.6
325,383 + ABZR87_RS01545 0.19 +0.5
325,384 - ABZR87_RS01545 0.19 -1.2
325,384 - ABZR87_RS01545 0.19 +0.2
325,384 - ABZR87_RS01545 0.19 +0.3
325,713 + ABZR87_RS01545 0.41 -0.9
325,713 + ABZR87_RS01545 0.41 -0.2
325,713 + ABZR87_RS01545 0.41 -0.1
325,713 + ABZR87_RS01545 0.41 +0.0
325,714 - ABZR87_RS01545 0.41 +0.3
325,714 - ABZR87_RS01545 0.41 +0.4
325,714 - ABZR87_RS01545 0.41 -0.2
325,740 + ABZR87_RS01545 0.43 -0.0
325,740 + ABZR87_RS01545 0.43 +0.1
325,741 - ABZR87_RS01545 0.43 -0.6
325,741 - ABZR87_RS01545 0.43 +0.2
325,866 + ABZR87_RS01545 0.51 -0.2
325,867 - ABZR87_RS01545 0.51 -0.7
325,867 - ABZR87_RS01545 0.51 +0.0
325,872 + ABZR87_RS01545 0.51 -0.8
325,872 + ABZR87_RS01545 0.51 +0.7
325,922 - ABZR87_RS01545 0.55 +0.5

Or see this region's nucleotide sequence