Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides ABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides ABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotides
ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240
_RS00955
ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935
_RS00960
ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777
_RS00965
ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076
_RS00970
Position (kb) 190
191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.220 kb on + strand at 190.220 kb on + strand at 190.221 kb on - strand at 190.221 kb on - strand at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.513 kb on + strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.532 kb on + strand, within ABZR87_RS00960 at 190.550 kb on - strand, within ABZR87_RS00960 at 190.880 kb on + strand at 190.880 kb on + strand at 190.880 kb on + strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.934 kb on - strand at 190.945 kb on + strand at 190.946 kb on - strand at 190.946 kb on - strand at 190.946 kb on - strand at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.335 kb on + strand, within ABZR87_RS00965 at 191.365 kb on + strand, within ABZR87_RS00965 at 191.366 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 192.225 kb on - strand, within ABZR87_RS00965 at 192.258 kb on - strand, within ABZR87_RS00965 at 192.258 kb on - strand, within ABZR87_RS00965 at 192.299 kb on + strand, within ABZR87_RS00965 at 192.299 kb on + strand, within ABZR87_RS00965 at 192.300 kb on - strand, within ABZR87_RS00965 at 192.305 kb on + strand, within ABZR87_RS00965 at 192.305 kb on + strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.306 kb on - strand, within ABZR87_RS00965 at 192.317 kb on + strand, within ABZR87_RS00965 at 192.317 kb on + strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.318 kb on - strand, within ABZR87_RS00965 at 192.366 kb on + strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.367 kb on - strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.368 kb on + strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.369 kb on - strand, within ABZR87_RS00965 at 192.378 kb on - strand, within ABZR87_RS00965 at 192.378 kb on - strand, within ABZR87_RS00965 at 192.579 kb on - strand, within ABZR87_RS00965 at 192.680 kb on + strand at 192.680 kb on + strand at 192.680 kb on + strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.681 kb on - strand at 192.689 kb on + strand at 192.808 kb on + strand at 192.808 kb on + strand at 192.808 kb on + strand at 192.809 kb on - strand at 192.809 kb on - strand at 192.809 kb on - strand at 192.827 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.866 kb on - strand at 192.874 kb on - strand at 192.883 kb on - strand at 192.911 kb on + strand at 192.917 kb on + strand at 192.917 kb on + strand at 192.918 kb on - strand at 192.918 kb on - strand at 192.929 kb on + strand at 192.929 kb on + strand at 192.930 kb on - strand at 192.930 kb on - strand at 192.930 kb on - strand at 192.949 kb on + strand at 192.950 kb on - strand at 192.950 kb on - strand at 192.950 kb on - strand at 193.082 kb on + strand, within ABZR87_RS00970 at 193.082 kb on + strand, within ABZR87_RS00970 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.357 kb on - strand, within ABZR87_RS00970
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 190,220 + +0.7 190,220 + +0.9 190,221 - -0.2 190,221 - +0.3 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 +0.3 190,495 + ABZR87_RS00960 0.37 +2.4 190,495 + ABZR87_RS00960 0.37 +0.7 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 +0.6 190,495 + ABZR87_RS00960 0.37 +0.4 190,495 + ABZR87_RS00960 0.37 -0.4 190,495 + ABZR87_RS00960 0.37 +0.7 190,495 + ABZR87_RS00960 0.37 -0.7 190,496 - ABZR87_RS00960 0.37 +0.7 190,496 - ABZR87_RS00960 0.37 -0.3 190,496 - ABZR87_RS00960 0.37 +0.6 190,496 - ABZR87_RS00960 0.37 -1.1 190,496 - ABZR87_RS00960 0.37 -0.0 190,496 - ABZR87_RS00960 0.37 -0.1 190,513 + ABZR87_RS00960 0.39 -0.1 190,514 - ABZR87_RS00960 0.40 +0.1 190,514 - ABZR87_RS00960 0.40 +1.7 190,514 - ABZR87_RS00960 0.40 -0.3 190,514 - ABZR87_RS00960 0.40 +0.3 190,532 + ABZR87_RS00960 0.42 -0.1 190,550 - ABZR87_RS00960 0.45 +1.0 190,880 + -0.2 190,880 + -1.0 190,880 + -0.7 190,881 - -0.6 190,881 - +0.3 190,881 - +0.1 190,881 - +0.4 190,934 - -1.3 190,945 + -0.3 190,946 - -0.5 190,946 - +0.6 190,946 - +1.1 191,210 + ABZR87_RS00965 0.17 -0.6 191,210 + ABZR87_RS00965 0.17 +0.1 191,210 + ABZR87_RS00965 0.17 -1.7 191,210 + ABZR87_RS00965 0.17 +0.8 191,211 - ABZR87_RS00965 0.17 -2.0 191,211 - ABZR87_RS00965 0.17 +0.8 191,211 - ABZR87_RS00965 0.17 -0.0 191,211 - ABZR87_RS00965 0.17 +0.7 191,335 + ABZR87_RS00965 0.24 +0.6 191,365 + ABZR87_RS00965 0.26 +1.2 191,366 - ABZR87_RS00965 0.26 +0.4 191,598 - ABZR87_RS00965 0.38 +0.5 191,598 - ABZR87_RS00965 0.38 +0.4 191,774 + ABZR87_RS00965 0.47 -0.2 191,774 + ABZR87_RS00965 0.47 -0.4 191,775 - ABZR87_RS00965 0.47 +0.7 191,775 - ABZR87_RS00965 0.47 -1.6 192,225 - ABZR87_RS00965 0.71 +0.3 192,258 - ABZR87_RS00965 0.73 +0.7 192,258 - ABZR87_RS00965 0.73 -0.2 192,299 + ABZR87_RS00965 0.75 -0.1 192,299 + ABZR87_RS00965 0.75 +0.3 192,300 - ABZR87_RS00965 0.75 -0.1 192,305 + ABZR87_RS00965 0.75 -1.0 192,305 + ABZR87_RS00965 0.75 +0.3 192,306 - ABZR87_RS00965 0.75 -0.3 192,306 - ABZR87_RS00965 0.75 +0.1 192,306 - ABZR87_RS00965 0.75 -0.1 192,317 + ABZR87_RS00965 0.76 -0.7 192,317 + ABZR87_RS00965 0.76 +0.0 192,318 - ABZR87_RS00965 0.76 -0.5 192,318 - ABZR87_RS00965 0.76 -0.6 192,318 - ABZR87_RS00965 0.76 +0.5 192,318 - ABZR87_RS00965 0.76 +0.5 192,318 - ABZR87_RS00965 0.76 -0.0 192,366 + ABZR87_RS00965 0.78 +0.1 192,367 - ABZR87_RS00965 0.78 -0.3 192,367 - ABZR87_RS00965 0.78 -0.1 192,367 - ABZR87_RS00965 0.78 +0.3 192,368 + ABZR87_RS00965 0.78 -0.8 192,368 + ABZR87_RS00965 0.78 +0.4 192,368 + ABZR87_RS00965 0.78 +0.0 192,368 + ABZR87_RS00965 0.78 +0.9 192,368 + ABZR87_RS00965 0.78 +0.0 192,368 + ABZR87_RS00965 0.78 -0.6 192,368 + ABZR87_RS00965 0.78 +0.8 192,368 + ABZR87_RS00965 0.78 -0.3 192,368 + ABZR87_RS00965 0.78 +0.7 192,369 - ABZR87_RS00965 0.78 +0.3 192,369 - ABZR87_RS00965 0.78 +0.3 192,369 - ABZR87_RS00965 0.78 -0.0 192,369 - ABZR87_RS00965 0.78 +0.7 192,369 - ABZR87_RS00965 0.78 -1.0 192,378 - ABZR87_RS00965 0.79 +0.6 192,378 - ABZR87_RS00965 0.79 -1.9 192,579 - ABZR87_RS00965 0.90 -1.1 192,680 + -0.3 192,680 + +0.1 192,680 + +0.4 192,681 - -0.8 192,681 - +0.4 192,681 - -0.4 192,681 - -0.2 192,689 + +1.3 192,808 + -0.1 192,808 + +0.1 192,808 + -0.4 192,809 - +1.7 192,809 - +0.6 192,809 - -0.6 192,827 + +0.8 192,865 + -0.8 192,865 + -1.3 192,865 + -0.1 192,865 + +0.6 192,865 + -0.7 192,865 + +1.0 192,865 + -0.5 192,866 - +0.4 192,866 - -1.4 192,866 - -0.4 192,866 - +0.0 192,866 - -0.4 192,866 - +0.5 192,866 - -0.1 192,874 - +0.9 192,883 - +0.0 192,911 + -0.1 192,917 + -0.3 192,917 + +0.4 192,918 - +0.3 192,918 - +0.2 192,929 + -0.2 192,929 + +0.3 192,930 - +2.3 192,930 - +0.5 192,930 - +0.5 192,949 + -1.5 192,950 - +0.4 192,950 - +0.6 192,950 - -0.4 193,082 + ABZR87_RS00970 0.13 -1.5 193,082 + ABZR87_RS00970 0.13 +1.1 193,313 + ABZR87_RS00970 0.34 +1.8 193,313 + ABZR87_RS00970 0.34 -1.6 193,357 - ABZR87_RS00970 0.37 -2.3
Or see this region's nucleotide sequence