Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00950 and ABZR87_RS00955 are separated by 11 nucleotides ABZR87_RS00955 and ABZR87_RS00960 overlap by 4 nucleotides ABZR87_RS00960 and ABZR87_RS00965 overlap by 57 nucleotides
ABZR87_RS00950: ABZR87_RS00950 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 188,703 to 189,521
_RS00950
ABZR87_RS00955: ABZR87_RS00955 - ABC transporter permease, at 189,533 to 190,240
_RS00955
ABZR87_RS00960: ABZR87_RS00960 - ATP-binding cassette domain-containing protein, at 190,237 to 190,935
_RS00960
ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777
_RS00965
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.674 kb on + strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.675 kb on - strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.773 kb on + strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 189.774 kb on - strand, within ABZR87_RS00955 at 190.220 kb on + strand at 190.220 kb on + strand at 190.221 kb on - strand at 190.221 kb on - strand at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.495 kb on + strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.496 kb on - strand, within ABZR87_RS00960 at 190.513 kb on + strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.514 kb on - strand, within ABZR87_RS00960 at 190.532 kb on + strand, within ABZR87_RS00960 at 190.550 kb on - strand, within ABZR87_RS00960 at 190.880 kb on + strand at 190.880 kb on + strand at 190.880 kb on + strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.881 kb on - strand at 190.934 kb on - strand at 190.945 kb on + strand at 190.946 kb on - strand at 190.946 kb on - strand at 190.946 kb on - strand at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.210 kb on + strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.211 kb on - strand, within ABZR87_RS00965 at 191.335 kb on + strand, within ABZR87_RS00965 at 191.365 kb on + strand, within ABZR87_RS00965 at 191.366 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.598 kb on - strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.774 kb on + strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965 at 191.775 kb on - strand, within ABZR87_RS00965
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 189,674 + ABZR87_RS00955 0.20 +0.8 189,674 + ABZR87_RS00955 0.20 -0.9 189,674 + ABZR87_RS00955 0.20 -0.5 189,675 - ABZR87_RS00955 0.20 -1.4 189,675 - ABZR87_RS00955 0.20 +0.4 189,773 + ABZR87_RS00955 0.34 -0.8 189,773 + ABZR87_RS00955 0.34 +0.8 189,773 + ABZR87_RS00955 0.34 +0.8 189,773 + ABZR87_RS00955 0.34 -1.3 189,773 + ABZR87_RS00955 0.34 +0.0 189,773 + ABZR87_RS00955 0.34 +0.9 189,773 + ABZR87_RS00955 0.34 -0.7 189,774 - ABZR87_RS00955 0.34 -0.6 189,774 - ABZR87_RS00955 0.34 +0.6 189,774 - ABZR87_RS00955 0.34 +0.6 190,220 + +0.7 190,220 + +0.9 190,221 - -0.2 190,221 - +0.3 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 +0.3 190,495 + ABZR87_RS00960 0.37 +2.4 190,495 + ABZR87_RS00960 0.37 +0.7 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 -0.0 190,495 + ABZR87_RS00960 0.37 +0.6 190,495 + ABZR87_RS00960 0.37 +0.4 190,495 + ABZR87_RS00960 0.37 -0.4 190,495 + ABZR87_RS00960 0.37 +0.7 190,495 + ABZR87_RS00960 0.37 -0.7 190,496 - ABZR87_RS00960 0.37 +0.7 190,496 - ABZR87_RS00960 0.37 -0.3 190,496 - ABZR87_RS00960 0.37 +0.6 190,496 - ABZR87_RS00960 0.37 -1.1 190,496 - ABZR87_RS00960 0.37 -0.0 190,496 - ABZR87_RS00960 0.37 -0.1 190,513 + ABZR87_RS00960 0.39 -0.1 190,514 - ABZR87_RS00960 0.40 +0.1 190,514 - ABZR87_RS00960 0.40 +1.7 190,514 - ABZR87_RS00960 0.40 -0.3 190,514 - ABZR87_RS00960 0.40 +0.3 190,532 + ABZR87_RS00960 0.42 -0.1 190,550 - ABZR87_RS00960 0.45 +1.0 190,880 + -0.2 190,880 + -1.0 190,880 + -0.7 190,881 - -0.6 190,881 - +0.3 190,881 - +0.1 190,881 - +0.4 190,934 - -1.3 190,945 + -0.3 190,946 - -0.5 190,946 - +0.6 190,946 - +1.1 191,210 + ABZR87_RS00965 0.17 -0.6 191,210 + ABZR87_RS00965 0.17 +0.1 191,210 + ABZR87_RS00965 0.17 -1.7 191,210 + ABZR87_RS00965 0.17 +0.8 191,211 - ABZR87_RS00965 0.17 -2.0 191,211 - ABZR87_RS00965 0.17 +0.8 191,211 - ABZR87_RS00965 0.17 -0.0 191,211 - ABZR87_RS00965 0.17 +0.7 191,335 + ABZR87_RS00965 0.24 +0.6 191,365 + ABZR87_RS00965 0.26 +1.2 191,366 - ABZR87_RS00965 0.26 +0.4 191,598 - ABZR87_RS00965 0.38 +0.5 191,598 - ABZR87_RS00965 0.38 +0.4 191,774 + ABZR87_RS00965 0.47 -0.2 191,774 + ABZR87_RS00965 0.47 -0.4 191,775 - ABZR87_RS00965 0.47 +0.7 191,775 - ABZR87_RS00965 0.47 -1.6
Or see this region's nucleotide sequence