Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004533 and ABIE53_004534 are separated by 54 nucleotides ABIE53_004534 and ABIE53_004535 are separated by 64 nucleotides ABIE53_004535 and ABIE53_004536 are separated by 70 nucleotides ABIE53_004536 and ABIE53_004537 are separated by 25 nucleotides
ABIE53_004533: ABIE53_004533 - hypothetical protein, at 722,460 to 723,380
_004533
ABIE53_004534: ABIE53_004534 - hypothetical protein, at 723,435 to 724,046
_004534
ABIE53_004535: ABIE53_004535 - catechol 1,2-dioxygenase, at 724,111 to 725,046
_004535
ABIE53_004536: ABIE53_004536 - muconolactone D-isomerase, at 725,117 to 725,407
_004536
ABIE53_004537: ABIE53_004537 - muconate cycloisomerase, at 725,433 to 726,569
_004537
Position (kb) 724
725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 723.169 kb on - strand, within ABIE53_004533 at 723.169 kb on - strand, within ABIE53_004533 at 723.371 kb on - strand at 723.379 kb on - strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.434 kb on + strand at 723.451 kb on + strand at 723.604 kb on + strand, within ABIE53_004534 at 723.604 kb on + strand, within ABIE53_004534 at 723.605 kb on - strand, within ABIE53_004534 at 723.608 kb on + strand, within ABIE53_004534 at 723.656 kb on + strand, within ABIE53_004534 at 723.701 kb on - strand, within ABIE53_004534 at 723.893 kb on + strand, within ABIE53_004534 at 723.946 kb on + strand, within ABIE53_004534 at 723.947 kb on - strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.978 kb on + strand, within ABIE53_004534 at 723.979 kb on - strand, within ABIE53_004534 at 724.205 kb on + strand, within ABIE53_004535 at 724.205 kb on + strand, within ABIE53_004535 at 724.205 kb on + strand, within ABIE53_004535 at 724.332 kb on + strand, within ABIE53_004535 at 724.333 kb on - strand, within ABIE53_004535 at 724.333 kb on - strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.414 kb on + strand, within ABIE53_004535 at 724.415 kb on - strand, within ABIE53_004535 at 724.478 kb on + strand, within ABIE53_004535 at 724.478 kb on + strand, within ABIE53_004535 at 724.479 kb on - strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.718 kb on + strand, within ABIE53_004535 at 724.719 kb on - strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.799 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.825 kb on + strand, within ABIE53_004535 at 724.826 kb on - strand, within ABIE53_004535 at 725.066 kb on - strand at 725.096 kb on - strand at 725.096 kb on - strand at 725.179 kb on + strand, within ABIE53_004536 at 725.179 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.181 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.187 kb on + strand, within ABIE53_004536 at 725.250 kb on + strand, within ABIE53_004536 at 725.250 kb on + strand, within ABIE53_004536 at 725.251 kb on - strand, within ABIE53_004536 at 725.251 kb on - strand, within ABIE53_004536 at 725.400 kb on + strand at 725.435 kb on - strand at 725.476 kb on - strand at 725.542 kb on + strand at 725.684 kb on - strand, within ABIE53_004537 at 725.692 kb on - strand, within ABIE53_004537 at 725.692 kb on - strand, within ABIE53_004537 at 725.754 kb on + strand, within ABIE53_004537 at 725.769 kb on + strand, within ABIE53_004537 at 725.862 kb on + strand, within ABIE53_004537 at 726.025 kb on - strand, within ABIE53_004537
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 723,169 - ABIE53_004533 0.77 +0.1 723,169 - ABIE53_004533 0.77 +0.3 723,371 - -1.2 723,379 - +1.0 723,434 + -2.8 723,434 + +1.1 723,434 + +0.5 723,434 + +1.6 723,451 + -3.0 723,604 + ABIE53_004534 0.28 -0.1 723,604 + ABIE53_004534 0.28 +1.1 723,605 - ABIE53_004534 0.28 +0.9 723,608 + ABIE53_004534 0.28 +2.1 723,656 + ABIE53_004534 0.36 -0.4 723,701 - ABIE53_004534 0.43 +1.0 723,893 + ABIE53_004534 0.75 -0.6 723,946 + ABIE53_004534 0.83 -1.2 723,947 - ABIE53_004534 0.84 -0.9 723,978 + ABIE53_004534 0.89 +0.1 723,978 + ABIE53_004534 0.89 -0.2 723,978 + ABIE53_004534 0.89 -0.9 723,978 + ABIE53_004534 0.89 -0.0 723,979 - ABIE53_004534 0.89 +0.7 724,205 + ABIE53_004535 0.10 -0.8 724,205 + ABIE53_004535 0.10 +1.0 724,205 + ABIE53_004535 0.10 -1.7 724,332 + ABIE53_004535 0.24 -1.0 724,333 - ABIE53_004535 0.24 -0.5 724,333 - ABIE53_004535 0.24 +0.5 724,414 + ABIE53_004535 0.32 -0.6 724,414 + ABIE53_004535 0.32 +0.1 724,414 + ABIE53_004535 0.32 +0.7 724,415 - ABIE53_004535 0.32 -0.4 724,478 + ABIE53_004535 0.39 -0.9 724,478 + ABIE53_004535 0.39 -2.8 724,479 - ABIE53_004535 0.39 +2.7 724,718 + ABIE53_004535 0.65 -0.0 724,718 + ABIE53_004535 0.65 -0.2 724,719 - ABIE53_004535 0.65 -0.3 724,799 + ABIE53_004535 0.74 -0.2 724,799 + ABIE53_004535 0.74 -0.4 724,825 + ABIE53_004535 0.76 -0.6 724,825 + ABIE53_004535 0.76 +0.2 724,826 - ABIE53_004535 0.76 -0.5 725,066 - +0.3 725,096 - +0.1 725,096 - +0.6 725,179 + ABIE53_004536 0.21 -0.7 725,179 + ABIE53_004536 0.21 -0.4 725,181 + ABIE53_004536 0.22 -0.4 725,181 + ABIE53_004536 0.22 -2.2 725,181 + ABIE53_004536 0.22 -0.5 725,181 + ABIE53_004536 0.22 -0.8 725,187 + ABIE53_004536 0.24 +0.1 725,187 + ABIE53_004536 0.24 -0.2 725,187 + ABIE53_004536 0.24 -0.4 725,187 + ABIE53_004536 0.24 -0.7 725,250 + ABIE53_004536 0.46 -1.9 725,250 + ABIE53_004536 0.46 -1.8 725,251 - ABIE53_004536 0.46 -2.0 725,251 - ABIE53_004536 0.46 -1.8 725,400 + +2.1 725,435 - +2.1 725,476 - +2.7 725,542 + +0.1 725,684 - ABIE53_004537 0.22 +0.1 725,692 - ABIE53_004537 0.23 -0.7 725,692 - ABIE53_004537 0.23 -0.1 725,754 + ABIE53_004537 0.28 -0.2 725,769 + ABIE53_004537 0.30 +0.6 725,862 + ABIE53_004537 0.38 +1.4 726,025 - ABIE53_004537 0.52 -2.4
Or see this region's nucleotide sequence