Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03305 and BWI76_RS03310 are separated by 24 nucleotides BWI76_RS03310 and BWI76_RS03315 are separated by 186 nucleotides BWI76_RS03315 and BWI76_RS03320 are separated by 56 nucleotides
BWI76_RS03305: BWI76_RS03305 - hypothetical protein, at 681,094 to 682,334
_RS03305
BWI76_RS03310: BWI76_RS03310 - AraC family transcriptional regulator, at 682,359 to 682,946
_RS03310
BWI76_RS03315: BWI76_RS03315 - clavaldehyde dehydrogenase, at 683,133 to 683,900
_RS03315
BWI76_RS03320: BWI76_RS03320 - alcohol dehydrogenase, at 683,957 to 685,015
_RS03320
Position (kb) 683
684 Strain fitness (log2 ratio) -2
-1
0
1
2 at 682.401 kb on - strand at 682.457 kb on + strand, within BWI76_RS03310 at 682.462 kb on + strand, within BWI76_RS03310 at 682.660 kb on + strand, within BWI76_RS03310 at 682.744 kb on - strand, within BWI76_RS03310 at 682.776 kb on + strand, within BWI76_RS03310 at 682.943 kb on + strand at 683.035 kb on + strand at 683.180 kb on - strand at 683.424 kb on - strand, within BWI76_RS03315 at 683.497 kb on + strand at 683.548 kb on + strand, within BWI76_RS03315 at 683.554 kb on + strand, within BWI76_RS03315 at 683.562 kb on - strand, within BWI76_RS03315 at 683.562 kb on - strand, within BWI76_RS03315 at 683.844 kb on + strand at 683.934 kb on + strand at 683.947 kb on + strand at 683.953 kb on - strand at 683.965 kb on - strand at 683.981 kb on - strand at 684.000 kb on - strand at 684.000 kb on - strand at 684.086 kb on - strand, within BWI76_RS03320 at 684.104 kb on + strand, within BWI76_RS03320 at 684.114 kb on + strand, within BWI76_RS03320 at 684.130 kb on + strand, within BWI76_RS03320 at 684.159 kb on + strand, within BWI76_RS03320 at 684.196 kb on + strand, within BWI76_RS03320 at 684.196 kb on + strand, within BWI76_RS03320 at 684.396 kb on + strand at 684.431 kb on + strand, within BWI76_RS03320 at 684.461 kb on + strand, within BWI76_RS03320 at 684.492 kb on + strand, within BWI76_RS03320 at 684.510 kb on + strand, within BWI76_RS03320 at 684.519 kb on - strand, within BWI76_RS03320 at 684.546 kb on + strand, within BWI76_RS03320 at 684.566 kb on - strand, within BWI76_RS03320 at 684.589 kb on + strand, within BWI76_RS03320 at 684.597 kb on + strand, within BWI76_RS03320 at 684.606 kb on - strand, within BWI76_RS03320 at 684.609 kb on + strand, within BWI76_RS03320 at 684.708 kb on + strand, within BWI76_RS03320 at 684.712 kb on + strand, within BWI76_RS03320 at 684.752 kb on + strand, within BWI76_RS03320 at 684.827 kb on + strand, within BWI76_RS03320 at 684.833 kb on - strand, within BWI76_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 682,401 - +0.4 682,457 + BWI76_RS03310 0.17 +1.2 682,462 + BWI76_RS03310 0.18 -0.4 682,660 + BWI76_RS03310 0.51 +2.2 682,744 - BWI76_RS03310 0.65 -1.7 682,776 + BWI76_RS03310 0.71 -0.4 682,943 + +0.1 683,035 + -1.9 683,180 - +1.0 683,424 - BWI76_RS03315 0.38 +0.4 683,497 + -0.1 683,548 + BWI76_RS03315 0.54 +0.4 683,554 + BWI76_RS03315 0.55 +0.9 683,562 - BWI76_RS03315 0.56 +1.3 683,562 - BWI76_RS03315 0.56 -0.2 683,844 + -0.0 683,934 + -0.5 683,947 + +0.9 683,953 - -1.6 683,965 - -1.4 683,981 - +0.9 684,000 - +0.3 684,000 - +0.8 684,086 - BWI76_RS03320 0.12 -0.7 684,104 + BWI76_RS03320 0.14 +0.2 684,114 + BWI76_RS03320 0.15 -0.1 684,130 + BWI76_RS03320 0.16 +1.7 684,159 + BWI76_RS03320 0.19 +0.8 684,196 + BWI76_RS03320 0.23 +0.0 684,196 + BWI76_RS03320 0.23 +1.7 684,396 + +0.9 684,431 + BWI76_RS03320 0.45 +0.7 684,461 + BWI76_RS03320 0.48 +0.5 684,492 + BWI76_RS03320 0.51 -1.1 684,510 + BWI76_RS03320 0.52 +0.2 684,519 - BWI76_RS03320 0.53 -0.3 684,546 + BWI76_RS03320 0.56 +0.2 684,566 - BWI76_RS03320 0.58 +0.5 684,589 + BWI76_RS03320 0.60 +0.2 684,597 + BWI76_RS03320 0.60 +0.1 684,606 - BWI76_RS03320 0.61 +1.8 684,609 + BWI76_RS03320 0.62 +2.2 684,708 + BWI76_RS03320 0.71 +0.6 684,712 + BWI76_RS03320 0.71 -1.8 684,752 + BWI76_RS03320 0.75 +0.7 684,827 + BWI76_RS03320 0.82 +1.4 684,833 - BWI76_RS03320 0.83 -0.1
Or see this region's nucleotide sequence