Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02720 and BWI76_RS02725 are separated by 84 nucleotides BWI76_RS02725 and BWI76_RS02730 are separated by 52 nucleotides
BWI76_RS02720: BWI76_RS02720 - NAD(P)-dependent oxidoreductase, at 551,086 to 551,934
_RS02720
BWI76_RS02725: BWI76_RS02725 - HxlR family transcriptional regulator, at 552,019 to 552,402
_RS02725
BWI76_RS02730: BWI76_RS02730 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 552,455 to 554,398
_RS02730
Position (kb) 552
553 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.229 kb on + strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.237 kb on - strand, within BWI76_RS02720 at 551.318 kb on - strand, within BWI76_RS02720 at 551.341 kb on - strand, within BWI76_RS02720 at 551.543 kb on - strand, within BWI76_RS02720 at 551.604 kb on - strand, within BWI76_RS02720 at 551.666 kb on + strand, within BWI76_RS02720 at 551.854 kb on - strand at 551.901 kb on - strand at 551.937 kb on + strand at 552.264 kb on - strand, within BWI76_RS02725 at 552.409 kb on + strand at 552.437 kb on - strand at 552.688 kb on + strand, within BWI76_RS02730 at 553.210 kb on + strand, within BWI76_RS02730 at 553.225 kb on + strand, within BWI76_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 551,229 + BWI76_RS02720 0.17 +1.9 551,237 - BWI76_RS02720 0.18 -1.7 551,237 - BWI76_RS02720 0.18 +0.2 551,318 - BWI76_RS02720 0.27 +0.1 551,341 - BWI76_RS02720 0.30 +0.5 551,543 - BWI76_RS02720 0.54 +1.2 551,604 - BWI76_RS02720 0.61 -0.2 551,666 + BWI76_RS02720 0.68 +0.4 551,854 - +0.6 551,901 - +0.9 551,937 + -2.2 552,264 - BWI76_RS02725 0.64 -1.5 552,409 + +0.9 552,437 - +0.3 552,688 + BWI76_RS02730 0.12 -1.1 553,210 + BWI76_RS02730 0.39 +0.9 553,225 + BWI76_RS02730 0.40 -0.7
Or see this region's nucleotide sequence