Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01900 and BWI76_RS01905 are separated by 140 nucleotides BWI76_RS01905 and BWI76_RS01910 are separated by 177 nucleotides
BWI76_RS01900: BWI76_RS01900 - tRNA-dihydrouridine synthase A, at 386,840 to 387,835
_RS01900
BWI76_RS01905: BWI76_RS01905 - envelope stress response protein PspG, at 387,976 to 388,218
_RS01905
BWI76_RS01910: BWI76_RS01910 - quinone oxidoreductase, at 388,396 to 389,379
_RS01910
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1 at 387.444 kb on - strand, within BWI76_RS01900 at 387.475 kb on - strand, within BWI76_RS01900 at 387.505 kb on + strand, within BWI76_RS01900 at 387.657 kb on + strand, within BWI76_RS01900 at 387.675 kb on + strand, within BWI76_RS01900 at 387.795 kb on + strand at 387.911 kb on + strand at 388.065 kb on - strand, within BWI76_RS01905 at 388.072 kb on + strand, within BWI76_RS01905 at 388.292 kb on + strand at 388.337 kb on - strand at 388.337 kb on - strand at 388.379 kb on - strand at 388.380 kb on - strand at 388.677 kb on - strand, within BWI76_RS01910 at 388.735 kb on + strand, within BWI76_RS01910 at 388.795 kb on - strand, within BWI76_RS01910 at 388.859 kb on + strand, within BWI76_RS01910 at 388.905 kb on + strand, within BWI76_RS01910 at 388.917 kb on + strand, within BWI76_RS01910 at 388.925 kb on - strand, within BWI76_RS01910 at 388.988 kb on + strand, within BWI76_RS01910 at 388.997 kb on + strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 388.998 kb on - strand, within BWI76_RS01910 at 389.098 kb on - strand, within BWI76_RS01910 at 389.107 kb on - strand, within BWI76_RS01910 at 389.132 kb on - strand, within BWI76_RS01910
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 387,444 - BWI76_RS01900 0.61 +1.1 387,475 - BWI76_RS01900 0.64 -0.5 387,505 + BWI76_RS01900 0.67 -0.3 387,657 + BWI76_RS01900 0.82 +0.1 387,675 + BWI76_RS01900 0.84 +0.7 387,795 + -0.8 387,911 + +0.5 388,065 - BWI76_RS01905 0.37 -2.6 388,072 + BWI76_RS01905 0.40 -0.8 388,292 + +0.4 388,337 - -0.5 388,337 - +0.1 388,379 - +0.5 388,380 - +0.5 388,677 - BWI76_RS01910 0.29 -0.0 388,735 + BWI76_RS01910 0.34 +0.4 388,795 - BWI76_RS01910 0.41 -0.6 388,859 + BWI76_RS01910 0.47 +0.3 388,905 + BWI76_RS01910 0.52 -0.1 388,917 + BWI76_RS01910 0.53 -1.8 388,925 - BWI76_RS01910 0.54 +0.4 388,988 + BWI76_RS01910 0.60 -0.7 388,997 + BWI76_RS01910 0.61 +0.7 388,998 - BWI76_RS01910 0.61 -1.2 388,998 - BWI76_RS01910 0.61 +0.3 389,098 - BWI76_RS01910 0.71 +0.2 389,107 - BWI76_RS01910 0.72 +0.3 389,132 - BWI76_RS01910 0.75 +0.9
Or see this region's nucleotide sequence