Experiment: Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01670 and BWI76_RS01675 are separated by 13 nucleotides BWI76_RS01675 and BWI76_RS01680 are separated by 0 nucleotides
BWI76_RS01670: BWI76_RS01670 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 339,957 to 341,699
_RS01670
BWI76_RS01675: BWI76_RS01675 - putative cytoplasmic protein, at 341,713 to 342,126
_RS01675
BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954
_RS01680
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 340.757 kb on + strand, within BWI76_RS01670 at 340.785 kb on + strand, within BWI76_RS01670 at 340.805 kb on + strand, within BWI76_RS01670 at 341.023 kb on + strand, within BWI76_RS01670 at 341.031 kb on - strand, within BWI76_RS01670 at 341.078 kb on - strand, within BWI76_RS01670 at 341.087 kb on - strand, within BWI76_RS01670 at 341.190 kb on - strand, within BWI76_RS01670 at 341.238 kb on - strand, within BWI76_RS01670 at 341.266 kb on + strand, within BWI76_RS01670 at 341.287 kb on + strand, within BWI76_RS01670 at 341.323 kb on + strand, within BWI76_RS01670 at 341.440 kb on + strand, within BWI76_RS01670 at 341.479 kb on - strand, within BWI76_RS01670 at 341.710 kb on + strand at 341.718 kb on - strand at 341.749 kb on - strand at 341.856 kb on - strand at 341.890 kb on - strand, within BWI76_RS01675 at 342.135 kb on + strand at 342.297 kb on - strand, within BWI76_RS01680 at 342.302 kb on - strand, within BWI76_RS01680 at 342.323 kb on - strand, within BWI76_RS01680 at 342.379 kb on - strand, within BWI76_RS01680 at 342.413 kb on - strand, within BWI76_RS01680 at 342.525 kb on + strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.773 kb on + strand, within BWI76_RS01680 at 343.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml remove 340,757 + BWI76_RS01670 0.46 -0.4 340,785 + BWI76_RS01670 0.48 +0.2 340,805 + BWI76_RS01670 0.49 +0.0 341,023 + BWI76_RS01670 0.61 -2.2 341,031 - BWI76_RS01670 0.62 +1.0 341,078 - BWI76_RS01670 0.64 -1.2 341,087 - BWI76_RS01670 0.65 +0.5 341,190 - BWI76_RS01670 0.71 +0.5 341,238 - BWI76_RS01670 0.73 -0.5 341,266 + BWI76_RS01670 0.75 -1.4 341,287 + BWI76_RS01670 0.76 -0.8 341,323 + BWI76_RS01670 0.78 +0.7 341,440 + BWI76_RS01670 0.85 +0.5 341,479 - BWI76_RS01670 0.87 +0.1 341,710 + -0.1 341,718 - -0.4 341,749 - +0.1 341,856 - +1.0 341,890 - BWI76_RS01675 0.43 +0.9 342,135 + +0.2 342,297 - BWI76_RS01680 0.21 -1.0 342,302 - BWI76_RS01680 0.21 -1.4 342,323 - BWI76_RS01680 0.24 -1.3 342,379 - BWI76_RS01680 0.30 -0.6 342,413 - BWI76_RS01680 0.35 -0.5 342,525 + BWI76_RS01680 0.48 -1.8 342,533 - BWI76_RS01680 0.49 +0.8 342,533 - BWI76_RS01680 0.49 -1.9 342,773 + BWI76_RS01680 0.78 -0.2 343,064 - +0.4
Or see this region's nucleotide sequence