Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29370

Experiment: Carbon source D-Mannitol 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29365 and AO356_29370 are separated by 186 nucleotidesAO356_29370 and AO356_29375 are separated by 104 nucleotides AO356_29365: AO356_29365 - LysR family transcriptional regulator, at 6,830,192 to 6,831,106 _29365 AO356_29370: AO356_29370 - ABC transporter substrate-binding protein, at 6,831,293 to 6,832,813 _29370 AO356_29375: AO356_29375 - ABC transporter permease, at 6,832,918 to 6,833,835 _29375 Position (kb) 6831 6832 6833Strain fitness (log2 ratio) -2 -1 0 1 2at 6830.407 kb on + strand, within AO356_29365at 6830.407 kb on + strand, within AO356_29365at 6830.408 kb on - strand, within AO356_29365at 6830.408 kb on - strand, within AO356_29365at 6830.410 kb on - strand, within AO356_29365at 6830.424 kb on + strand, within AO356_29365at 6830.425 kb on - strand, within AO356_29365at 6830.428 kb on + strand, within AO356_29365at 6830.742 kb on + strand, within AO356_29365at 6830.743 kb on - strand, within AO356_29365at 6830.743 kb on - strand, within AO356_29365at 6830.779 kb on - strand, within AO356_29365at 6830.779 kb on - strand, within AO356_29365at 6830.779 kb on - strand, within AO356_29365at 6831.096 kb on + strandat 6831.096 kb on + strandat 6831.096 kb on + strandat 6831.096 kb on + strandat 6831.097 kb on - strandat 6831.097 kb on - strandat 6831.182 kb on + strandat 6831.224 kb on + strandat 6831.387 kb on - strandat 6831.387 kb on - strandat 6831.387 kb on - strandat 6831.435 kb on + strandat 6831.635 kb on + strand, within AO356_29370at 6831.713 kb on + strand, within AO356_29370at 6831.713 kb on + strand, within AO356_29370at 6831.713 kb on + strand, within AO356_29370at 6831.762 kb on - strand, within AO356_29370at 6831.854 kb on + strand, within AO356_29370at 6831.854 kb on + strand, within AO356_29370at 6831.855 kb on - strand, within AO356_29370at 6831.856 kb on + strand, within AO356_29370at 6831.857 kb on - strand, within AO356_29370at 6831.911 kb on + strand, within AO356_29370at 6831.912 kb on - strand, within AO356_29370at 6832.063 kb on + strand, within AO356_29370at 6832.307 kb on + strand, within AO356_29370at 6832.397 kb on + strand, within AO356_29370at 6832.397 kb on + strand, within AO356_29370at 6832.667 kb on + strandat 6832.724 kb on + strandat 6832.725 kb on - strandat 6832.725 kb on - strandat 6832.736 kb on + strandat 6832.736 kb on + strandat 6832.743 kb on - strandat 6832.743 kb on - strandat 6832.954 kb on - strandat 6832.954 kb on - strandat 6832.954 kb on - strandat 6832.955 kb on + strandat 6833.107 kb on + strand, within AO356_29375at 6833.108 kb on - strand, within AO356_29375at 6833.461 kb on + strand, within AO356_29375at 6833.524 kb on + strand, within AO356_29375at 6833.524 kb on + strand, within AO356_29375at 6833.735 kb on + strand, within AO356_29375at 6833.736 kb on - strand, within AO356_29375at 6833.767 kb on + strandat 6833.768 kb on - strandat 6833.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM
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6,830,407 + AO356_29365 0.23 -1.1
6,830,407 + AO356_29365 0.23 +1.2
6,830,408 - AO356_29365 0.24 +0.6
6,830,408 - AO356_29365 0.24 +1.9
6,830,410 - AO356_29365 0.24 +0.6
6,830,424 + AO356_29365 0.25 +1.9
6,830,425 - AO356_29365 0.25 +0.7
6,830,428 + AO356_29365 0.26 -0.7
6,830,742 + AO356_29365 0.60 -1.1
6,830,743 - AO356_29365 0.60 -0.3
6,830,743 - AO356_29365 0.60 -1.0
6,830,779 - AO356_29365 0.64 -0.0
6,830,779 - AO356_29365 0.64 -0.4
6,830,779 - AO356_29365 0.64 +1.2
6,831,096 + -2.0
6,831,096 + +0.6
6,831,096 + +0.6
6,831,096 + -1.3
6,831,097 - -0.6
6,831,097 - -1.7
6,831,182 + +0.6
6,831,224 + -1.1
6,831,387 - -0.6
6,831,387 - +1.0
6,831,387 - +0.4
6,831,435 + +0.4
6,831,635 + AO356_29370 0.22 -0.3
6,831,713 + AO356_29370 0.28 -0.9
6,831,713 + AO356_29370 0.28 -1.6
6,831,713 + AO356_29370 0.28 -0.6
6,831,762 - AO356_29370 0.31 +0.1
6,831,854 + AO356_29370 0.37 -0.1
6,831,854 + AO356_29370 0.37 -1.0
6,831,855 - AO356_29370 0.37 +0.8
6,831,856 + AO356_29370 0.37 +0.3
6,831,857 - AO356_29370 0.37 +0.3
6,831,911 + AO356_29370 0.41 +0.2
6,831,912 - AO356_29370 0.41 -1.0
6,832,063 + AO356_29370 0.51 -0.4
6,832,307 + AO356_29370 0.67 -1.2
6,832,397 + AO356_29370 0.73 -0.3
6,832,397 + AO356_29370 0.73 -0.3
6,832,667 + -0.9
6,832,724 + +0.1
6,832,725 - +0.3
6,832,725 - +0.2
6,832,736 + +0.1
6,832,736 + +1.2
6,832,743 - -0.2
6,832,743 - +0.1
6,832,954 - +1.2
6,832,954 - +0.1
6,832,954 - -1.2
6,832,955 + +1.4
6,833,107 + AO356_29375 0.21 +0.7
6,833,108 - AO356_29375 0.21 -0.1
6,833,461 + AO356_29375 0.59 -0.4
6,833,524 + AO356_29375 0.66 -1.6
6,833,524 + AO356_29375 0.66 +1.2
6,833,735 + AO356_29375 0.89 +0.2
6,833,736 - AO356_29375 0.89 -1.2
6,833,767 + -0.5
6,833,768 - -0.4
6,833,768 - +0.0

Or see this region's nucleotide sequence