Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22585

Experiment: Carbon source D-Mannitol 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22580 and AO356_22585 are separated by 149 nucleotidesAO356_22585 and AO356_22590 are separated by 54 nucleotides AO356_22580: AO356_22580 - cytochrome C, at 5,046,620 to 5,047,000 _22580 AO356_22585: AO356_22585 - MerR family transcriptional regulator, at 5,047,150 to 5,047,650 _22585 AO356_22590: AO356_22590 - 2,4-dienoyl-CoA reductase, at 5,047,705 to 5,048,937 _22590 Position (kb) 5047 5048Strain fitness (log2 ratio) -2 -1 0 1 2at 5046.183 kb on - strandat 5046.183 kb on - strandat 5046.351 kb on + strandat 5046.352 kb on - strandat 5046.352 kb on - strandat 5046.483 kb on + strandat 5046.516 kb on - strandat 5046.522 kb on + strandat 5046.534 kb on + strandat 5046.592 kb on + strandat 5046.615 kb on + strandat 5046.648 kb on + strandat 5046.648 kb on + strandat 5046.648 kb on + strandat 5046.648 kb on + strandat 5046.648 kb on + strandat 5046.648 kb on + strandat 5046.649 kb on - strandat 5046.649 kb on - strandat 5046.649 kb on - strandat 5046.649 kb on - strandat 5046.649 kb on - strandat 5046.649 kb on - strandat 5046.752 kb on + strand, within AO356_22580at 5046.814 kb on + strand, within AO356_22580at 5046.815 kb on - strand, within AO356_22580at 5046.815 kb on - strand, within AO356_22580at 5046.815 kb on - strand, within AO356_22580at 5046.899 kb on + strand, within AO356_22580at 5046.899 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.903 kb on + strand, within AO356_22580at 5046.904 kb on - strand, within AO356_22580at 5046.904 kb on - strand, within AO356_22580at 5046.971 kb on + strandat 5046.971 kb on + strandat 5046.972 kb on - strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.007 kb on + strandat 5047.008 kb on - strandat 5047.008 kb on - strandat 5047.008 kb on - strandat 5047.008 kb on - strandat 5047.034 kb on + strandat 5047.034 kb on + strandat 5047.048 kb on + strandat 5047.048 kb on + strandat 5047.049 kb on - strandat 5047.062 kb on + strandat 5047.062 kb on + strandat 5047.062 kb on + strandat 5047.062 kb on + strandat 5047.062 kb on + strandat 5047.063 kb on - strandat 5047.063 kb on - strandat 5047.083 kb on + strandat 5047.083 kb on + strandat 5047.110 kb on + strandat 5047.110 kb on + strandat 5047.110 kb on + strandat 5047.111 kb on - strandat 5047.111 kb on - strandat 5047.111 kb on - strandat 5047.111 kb on - strandat 5047.116 kb on + strandat 5047.116 kb on + strandat 5047.116 kb on + strandat 5047.116 kb on + strandat 5047.116 kb on + strandat 5047.117 kb on - strandat 5047.207 kb on + strand, within AO356_22585at 5047.449 kb on + strand, within AO356_22585at 5047.450 kb on - strand, within AO356_22585at 5047.672 kb on + strandat 5047.683 kb on + strandat 5047.683 kb on + strandat 5047.684 kb on - strandat 5047.969 kb on - strand, within AO356_22590at 5048.070 kb on - strand, within AO356_22590at 5048.224 kb on + strand, within AO356_22590at 5048.483 kb on - strand, within AO356_22590at 5048.542 kb on + strand, within AO356_22590at 5048.542 kb on + strand, within AO356_22590at 5048.543 kb on - strand, within AO356_22590at 5048.543 kb on - strand, within AO356_22590at 5048.609 kb on + strand, within AO356_22590at 5048.609 kb on + strand, within AO356_22590at 5048.610 kb on - strand, within AO356_22590at 5048.610 kb on - strand, within AO356_22590

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM
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5,046,183 - +1.4
5,046,183 - +0.1
5,046,351 + +0.5
5,046,352 - -1.2
5,046,352 - +0.6
5,046,483 + +1.0
5,046,516 - -0.0
5,046,522 + -0.6
5,046,534 + -1.3
5,046,592 + +1.4
5,046,615 + +1.2
5,046,648 + -0.2
5,046,648 + +0.8
5,046,648 + +0.0
5,046,648 + +0.1
5,046,648 + +1.0
5,046,648 + +0.0
5,046,649 - +0.3
5,046,649 - -1.3
5,046,649 - -0.2
5,046,649 - +0.6
5,046,649 - -0.1
5,046,649 - -0.1
5,046,752 + AO356_22580 0.35 -0.0
5,046,814 + AO356_22580 0.51 -0.9
5,046,815 - AO356_22580 0.51 +0.2
5,046,815 - AO356_22580 0.51 +1.9
5,046,815 - AO356_22580 0.51 +0.3
5,046,899 + AO356_22580 0.73 -0.4
5,046,899 + AO356_22580 0.73 +0.5
5,046,903 + AO356_22580 0.74 -0.1
5,046,903 + AO356_22580 0.74 -0.5
5,046,903 + AO356_22580 0.74 +0.7
5,046,903 + AO356_22580 0.74 +1.4
5,046,903 + AO356_22580 0.74 -0.8
5,046,903 + AO356_22580 0.74 -0.3
5,046,904 - AO356_22580 0.75 +1.2
5,046,904 - AO356_22580 0.75 +1.7
5,046,971 + +0.9
5,046,971 + -0.1
5,046,972 - -1.1
5,047,007 + +0.7
5,047,007 + -1.2
5,047,007 + +0.2
5,047,007 + +0.5
5,047,007 + +0.4
5,047,007 + -0.2
5,047,007 + +0.2
5,047,008 - +1.4
5,047,008 - +0.2
5,047,008 - -0.1
5,047,008 - +0.3
5,047,034 + +0.5
5,047,034 + -1.7
5,047,048 + -0.4
5,047,048 + -0.5
5,047,049 - -0.1
5,047,062 + -0.2
5,047,062 + -1.3
5,047,062 + -0.4
5,047,062 + -0.7
5,047,062 + -0.4
5,047,063 - +0.7
5,047,063 - -1.0
5,047,083 + +0.3
5,047,083 + +1.3
5,047,110 + +1.2
5,047,110 + -0.1
5,047,110 + -0.2
5,047,111 - -0.3
5,047,111 - +0.7
5,047,111 - -0.4
5,047,111 - +0.9
5,047,116 + +0.6
5,047,116 + -1.3
5,047,116 + +0.3
5,047,116 + -1.8
5,047,116 + +0.4
5,047,117 - -0.3
5,047,207 + AO356_22585 0.11 +1.5
5,047,449 + AO356_22585 0.60 +0.7
5,047,450 - AO356_22585 0.60 +1.4
5,047,672 + +0.9
5,047,683 + +1.1
5,047,683 + +0.2
5,047,684 - -0.3
5,047,969 - AO356_22590 0.21 -0.5
5,048,070 - AO356_22590 0.30 -0.6
5,048,224 + AO356_22590 0.42 -0.3
5,048,483 - AO356_22590 0.63 -0.2
5,048,542 + AO356_22590 0.68 +0.2
5,048,542 + AO356_22590 0.68 +1.1
5,048,543 - AO356_22590 0.68 +0.5
5,048,543 - AO356_22590 0.68 +1.1
5,048,609 + AO356_22590 0.73 -1.2
5,048,609 + AO356_22590 0.73 -0.2
5,048,610 - AO356_22590 0.73 -1.2
5,048,610 - AO356_22590 0.73 +0.1

Or see this region's nucleotide sequence