Experiment: Carbon source D-Mannitol 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22580 and AO356_22585 are separated by 149 nucleotides AO356_22585 and AO356_22590 are separated by 54 nucleotides
AO356_22580: AO356_22580 - cytochrome C, at 5,046,620 to 5,047,000
_22580
AO356_22585: AO356_22585 - MerR family transcriptional regulator, at 5,047,150 to 5,047,650
_22585
AO356_22590: AO356_22590 - 2,4-dienoyl-CoA reductase, at 5,047,705 to 5,048,937
_22590
Position (kb)
5047
5048 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5046.183 kb on - strand at 5046.183 kb on - strand at 5046.351 kb on + strand at 5046.352 kb on - strand at 5046.352 kb on - strand at 5046.483 kb on + strand at 5046.516 kb on - strand at 5046.522 kb on + strand at 5046.534 kb on + strand at 5046.592 kb on + strand at 5046.615 kb on + strand at 5046.648 kb on + strand at 5046.648 kb on + strand at 5046.648 kb on + strand at 5046.648 kb on + strand at 5046.648 kb on + strand at 5046.648 kb on + strand at 5046.649 kb on - strand at 5046.649 kb on - strand at 5046.649 kb on - strand at 5046.649 kb on - strand at 5046.649 kb on - strand at 5046.649 kb on - strand at 5046.752 kb on + strand, within AO356_22580 at 5046.814 kb on + strand, within AO356_22580 at 5046.815 kb on - strand, within AO356_22580 at 5046.815 kb on - strand, within AO356_22580 at 5046.815 kb on - strand, within AO356_22580 at 5046.899 kb on + strand, within AO356_22580 at 5046.899 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.903 kb on + strand, within AO356_22580 at 5046.904 kb on - strand, within AO356_22580 at 5046.904 kb on - strand, within AO356_22580 at 5046.971 kb on + strand at 5046.971 kb on + strand at 5046.972 kb on - strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.007 kb on + strand at 5047.008 kb on - strand at 5047.008 kb on - strand at 5047.008 kb on - strand at 5047.008 kb on - strand at 5047.034 kb on + strand at 5047.034 kb on + strand at 5047.048 kb on + strand at 5047.048 kb on + strand at 5047.049 kb on - strand at 5047.062 kb on + strand at 5047.062 kb on + strand at 5047.062 kb on + strand at 5047.062 kb on + strand at 5047.062 kb on + strand at 5047.063 kb on - strand at 5047.063 kb on - strand at 5047.083 kb on + strand at 5047.083 kb on + strand at 5047.110 kb on + strand at 5047.110 kb on + strand at 5047.110 kb on + strand at 5047.111 kb on - strand at 5047.111 kb on - strand at 5047.111 kb on - strand at 5047.111 kb on - strand at 5047.116 kb on + strand at 5047.116 kb on + strand at 5047.116 kb on + strand at 5047.116 kb on + strand at 5047.116 kb on + strand at 5047.117 kb on - strand at 5047.207 kb on + strand, within AO356_22585 at 5047.449 kb on + strand, within AO356_22585 at 5047.450 kb on - strand, within AO356_22585 at 5047.672 kb on + strand at 5047.683 kb on + strand at 5047.683 kb on + strand at 5047.684 kb on - strand at 5047.969 kb on - strand, within AO356_22590 at 5048.070 kb on - strand, within AO356_22590 at 5048.224 kb on + strand, within AO356_22590 at 5048.483 kb on - strand, within AO356_22590 at 5048.542 kb on + strand, within AO356_22590 at 5048.542 kb on + strand, within AO356_22590 at 5048.543 kb on - strand, within AO356_22590 at 5048.543 kb on - strand, within AO356_22590 at 5048.609 kb on + strand, within AO356_22590 at 5048.609 kb on + strand, within AO356_22590 at 5048.610 kb on - strand, within AO356_22590 at 5048.610 kb on - strand, within AO356_22590
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM remove 5,046,183 - +1.4 5,046,183 - +0.1 5,046,351 + +0.5 5,046,352 - -1.2 5,046,352 - +0.6 5,046,483 + +1.0 5,046,516 - -0.0 5,046,522 + -0.6 5,046,534 + -1.3 5,046,592 + +1.4 5,046,615 + +1.2 5,046,648 + -0.2 5,046,648 + +0.8 5,046,648 + +0.0 5,046,648 + +0.1 5,046,648 + +1.0 5,046,648 + +0.0 5,046,649 - +0.3 5,046,649 - -1.3 5,046,649 - -0.2 5,046,649 - +0.6 5,046,649 - -0.1 5,046,649 - -0.1 5,046,752 + AO356_22580 0.35 -0.0 5,046,814 + AO356_22580 0.51 -0.9 5,046,815 - AO356_22580 0.51 +0.2 5,046,815 - AO356_22580 0.51 +1.9 5,046,815 - AO356_22580 0.51 +0.3 5,046,899 + AO356_22580 0.73 -0.4 5,046,899 + AO356_22580 0.73 +0.5 5,046,903 + AO356_22580 0.74 -0.1 5,046,903 + AO356_22580 0.74 -0.5 5,046,903 + AO356_22580 0.74 +0.7 5,046,903 + AO356_22580 0.74 +1.4 5,046,903 + AO356_22580 0.74 -0.8 5,046,903 + AO356_22580 0.74 -0.3 5,046,904 - AO356_22580 0.75 +1.2 5,046,904 - AO356_22580 0.75 +1.7 5,046,971 + +0.9 5,046,971 + -0.1 5,046,972 - -1.1 5,047,007 + +0.7 5,047,007 + -1.2 5,047,007 + +0.2 5,047,007 + +0.5 5,047,007 + +0.4 5,047,007 + -0.2 5,047,007 + +0.2 5,047,008 - +1.4 5,047,008 - +0.2 5,047,008 - -0.1 5,047,008 - +0.3 5,047,034 + +0.5 5,047,034 + -1.7 5,047,048 + -0.4 5,047,048 + -0.5 5,047,049 - -0.1 5,047,062 + -0.2 5,047,062 + -1.3 5,047,062 + -0.4 5,047,062 + -0.7 5,047,062 + -0.4 5,047,063 - +0.7 5,047,063 - -1.0 5,047,083 + +0.3 5,047,083 + +1.3 5,047,110 + +1.2 5,047,110 + -0.1 5,047,110 + -0.2 5,047,111 - -0.3 5,047,111 - +0.7 5,047,111 - -0.4 5,047,111 - +0.9 5,047,116 + +0.6 5,047,116 + -1.3 5,047,116 + +0.3 5,047,116 + -1.8 5,047,116 + +0.4 5,047,117 - -0.3 5,047,207 + AO356_22585 0.11 +1.5 5,047,449 + AO356_22585 0.60 +0.7 5,047,450 - AO356_22585 0.60 +1.4 5,047,672 + +0.9 5,047,683 + +1.1 5,047,683 + +0.2 5,047,684 - -0.3 5,047,969 - AO356_22590 0.21 -0.5 5,048,070 - AO356_22590 0.30 -0.6 5,048,224 + AO356_22590 0.42 -0.3 5,048,483 - AO356_22590 0.63 -0.2 5,048,542 + AO356_22590 0.68 +0.2 5,048,542 + AO356_22590 0.68 +1.1 5,048,543 - AO356_22590 0.68 +0.5 5,048,543 - AO356_22590 0.68 +1.1 5,048,609 + AO356_22590 0.73 -1.2 5,048,609 + AO356_22590 0.73 -0.2 5,048,610 - AO356_22590 0.73 -1.2 5,048,610 - AO356_22590 0.73 +0.1
Or see this region's nucleotide sequence