Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19760

Experiment: Carbon source D-Mannitol 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19755 and AO356_19760 are separated by 126 nucleotidesAO356_19760 and AO356_19765 are separated by 233 nucleotidesAO356_19765 and AO356_19770 are separated by 181 nucleotides AO356_19755: AO356_19755 - pirin, at 4,430,487 to 4,431,347 _19755 AO356_19760: AO356_19760 - 5-oxo-L-prolinase, at 4,431,474 to 4,432,484 _19760 AO356_19765: AO356_19765 - helicase, at 4,432,718 to 4,433,182 _19765 AO356_19770: AO356_19770 - 3-oxoacyl-ACP synthase, at 4,433,364 to 4,434,584 _19770 Position (kb) 4431 4432 4433Strain fitness (log2 ratio) -2 -1 0 1 2at 4430.488 kb on + strandat 4430.694 kb on + strand, within AO356_19755at 4430.694 kb on + strand, within AO356_19755at 4430.694 kb on + strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.695 kb on - strand, within AO356_19755at 4430.715 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.755 kb on + strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.756 kb on - strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.824 kb on + strand, within AO356_19755at 4430.825 kb on - strand, within AO356_19755at 4430.825 kb on - strand, within AO356_19755at 4430.944 kb on + strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.945 kb on - strand, within AO356_19755at 4430.965 kb on + strand, within AO356_19755at 4430.966 kb on - strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.151 kb on + strand, within AO356_19755at 4431.152 kb on - strand, within AO356_19755at 4431.152 kb on - strand, within AO356_19755at 4431.152 kb on - strandat 4431.384 kb on + strandat 4431.385 kb on - strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.444 kb on + strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.445 kb on - strandat 4431.543 kb on + strandat 4431.543 kb on + strandat 4431.544 kb on - strandat 4431.544 kb on - strandat 4431.549 kb on + strandat 4431.549 kb on + strandat 4431.549 kb on + strandat 4431.550 kb on - strandat 4431.550 kb on - strandat 4431.570 kb on + strandat 4431.570 kb on + strandat 4431.571 kb on - strandat 4431.571 kb on - strandat 4431.711 kb on + strand, within AO356_19760at 4431.711 kb on + strand, within AO356_19760at 4431.711 kb on + strand, within AO356_19760at 4431.736 kb on - strand, within AO356_19760at 4431.736 kb on - strand, within AO356_19760at 4431.993 kb on + strand, within AO356_19760at 4431.993 kb on + strand, within AO356_19760at 4431.993 kb on + strand, within AO356_19760at 4431.994 kb on - strand, within AO356_19760at 4431.994 kb on - strand, within AO356_19760at 4431.994 kb on - strand, within AO356_19760at 4432.040 kb on + strand, within AO356_19760at 4432.041 kb on - strand, within AO356_19760at 4432.071 kb on + strand, within AO356_19760at 4432.072 kb on - strand, within AO356_19760at 4432.072 kb on - strand, within AO356_19760at 4432.072 kb on - strand, within AO356_19760at 4432.113 kb on - strand, within AO356_19760at 4432.227 kb on + strand, within AO356_19760at 4432.227 kb on + strand, within AO356_19760at 4432.227 kb on + strand, within AO356_19760at 4432.260 kb on + strand, within AO356_19760at 4432.261 kb on - strand, within AO356_19760at 4432.261 kb on - strand, within AO356_19760at 4432.370 kb on - strand, within AO356_19760at 4432.573 kb on + strandat 4432.574 kb on - strandat 4432.574 kb on - strandat 4432.574 kb on - strandat 4432.610 kb on - strandat 4432.610 kb on - strandat 4432.641 kb on - strandat 4432.641 kb on - strandat 4432.641 kb on - strandat 4432.641 kb on - strandat 4432.717 kb on + strandat 4432.717 kb on + strandat 4432.717 kb on + strandat 4432.718 kb on - strandat 4432.934 kb on + strand, within AO356_19765at 4432.983 kb on - strand, within AO356_19765at 4432.983 kb on - strand, within AO356_19765at 4433.081 kb on + strand, within AO356_19765at 4433.081 kb on + strand, within AO356_19765at 4433.082 kb on - strand, within AO356_19765at 4433.187 kb on + strandat 4433.248 kb on + strandat 4433.248 kb on + strandat 4433.248 kb on + strandat 4433.248 kb on + strandat 4433.248 kb on + strandat 4433.249 kb on - strandat 4433.249 kb on - strandat 4433.249 kb on - strandat 4433.249 kb on - strandat 4433.249 kb on - strandat 4433.249 kb on - strandat 4433.301 kb on + strandat 4433.301 kb on + strandat 4433.365 kb on + strandat 4433.365 kb on + strandat 4433.365 kb on + strandat 4433.365 kb on + strandat 4433.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM
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4,430,488 + +0.1
4,430,694 + AO356_19755 0.24 +0.4
4,430,694 + AO356_19755 0.24 +0.7
4,430,694 + AO356_19755 0.24 +0.3
4,430,695 - AO356_19755 0.24 +1.2
4,430,695 - AO356_19755 0.24 +0.2
4,430,695 - AO356_19755 0.24 -1.0
4,430,715 + AO356_19755 0.26 -0.1
4,430,755 + AO356_19755 0.31 +0.4
4,430,755 + AO356_19755 0.31 -0.7
4,430,755 + AO356_19755 0.31 +0.2
4,430,755 + AO356_19755 0.31 +0.2
4,430,755 + AO356_19755 0.31 +0.1
4,430,755 + AO356_19755 0.31 -0.5
4,430,756 - AO356_19755 0.31 -0.5
4,430,756 - AO356_19755 0.31 +0.1
4,430,756 - AO356_19755 0.31 +0.6
4,430,756 - AO356_19755 0.31 -0.7
4,430,824 + AO356_19755 0.39 -1.2
4,430,824 + AO356_19755 0.39 -0.3
4,430,824 + AO356_19755 0.39 +0.6
4,430,825 - AO356_19755 0.39 +0.6
4,430,825 - AO356_19755 0.39 +0.2
4,430,944 + AO356_19755 0.53 +0.9
4,430,945 - AO356_19755 0.53 +0.1
4,430,945 - AO356_19755 0.53 -0.6
4,430,945 - AO356_19755 0.53 +0.7
4,430,965 + AO356_19755 0.56 -0.7
4,430,966 - AO356_19755 0.56 +1.4
4,431,151 + AO356_19755 0.77 +1.3
4,431,151 + AO356_19755 0.77 -0.0
4,431,151 + AO356_19755 0.77 +0.2
4,431,151 + AO356_19755 0.77 +0.4
4,431,151 + AO356_19755 0.77 +0.6
4,431,152 - AO356_19755 0.77 +2.2
4,431,152 - AO356_19755 0.77 -0.3
4,431,152 - -1.2
4,431,384 + -0.9
4,431,385 - -1.4
4,431,444 + -0.0
4,431,444 + +1.5
4,431,444 + +0.6
4,431,444 + -0.1
4,431,444 + +0.6
4,431,444 + -0.1
4,431,444 + -0.2
4,431,444 + +0.1
4,431,445 - +0.2
4,431,445 - -0.9
4,431,445 - -0.3
4,431,445 - -0.6
4,431,445 - -0.2
4,431,445 - -0.7
4,431,445 - +0.3
4,431,445 - -2.7
4,431,543 + -0.2
4,431,543 + +0.1
4,431,544 - +1.1
4,431,544 - -0.4
4,431,549 + -0.0
4,431,549 + -0.2
4,431,549 + +0.4
4,431,550 - +0.2
4,431,550 - -1.4
4,431,570 + -0.4
4,431,570 + -0.3
4,431,571 - +0.3
4,431,571 - +0.4
4,431,711 + AO356_19760 0.23 -0.4
4,431,711 + AO356_19760 0.23 +0.6
4,431,711 + AO356_19760 0.23 +0.7
4,431,736 - AO356_19760 0.26 -0.7
4,431,736 - AO356_19760 0.26 -0.1
4,431,993 + AO356_19760 0.51 -0.9
4,431,993 + AO356_19760 0.51 -0.0
4,431,993 + AO356_19760 0.51 -1.9
4,431,994 - AO356_19760 0.51 +0.0
4,431,994 - AO356_19760 0.51 +0.8
4,431,994 - AO356_19760 0.51 +1.2
4,432,040 + AO356_19760 0.56 -0.7
4,432,041 - AO356_19760 0.56 +0.1
4,432,071 + AO356_19760 0.59 +0.3
4,432,072 - AO356_19760 0.59 +0.0
4,432,072 - AO356_19760 0.59 -2.5
4,432,072 - AO356_19760 0.59 -1.4
4,432,113 - AO356_19760 0.63 -0.2
4,432,227 + AO356_19760 0.74 +1.1
4,432,227 + AO356_19760 0.74 +0.2
4,432,227 + AO356_19760 0.74 -0.5
4,432,260 + AO356_19760 0.78 +0.4
4,432,261 - AO356_19760 0.78 -1.0
4,432,261 - AO356_19760 0.78 -0.8
4,432,370 - AO356_19760 0.89 -1.0
4,432,573 + -0.4
4,432,574 - +0.6
4,432,574 - -1.6
4,432,574 - -2.2
4,432,610 - -0.7
4,432,610 - -0.4
4,432,641 - +0.0
4,432,641 - +0.4
4,432,641 - -0.2
4,432,641 - +1.3
4,432,717 + -1.0
4,432,717 + -1.3
4,432,717 + +0.7
4,432,718 - +0.5
4,432,934 + AO356_19765 0.46 -0.0
4,432,983 - AO356_19765 0.57 -1.1
4,432,983 - AO356_19765 0.57 +0.2
4,433,081 + AO356_19765 0.78 +0.2
4,433,081 + AO356_19765 0.78 +0.0
4,433,082 - AO356_19765 0.78 +0.8
4,433,187 + +0.8
4,433,248 + +0.3
4,433,248 + -1.0
4,433,248 + -0.2
4,433,248 + +0.1
4,433,248 + -1.3
4,433,249 - +0.1
4,433,249 - +0.2
4,433,249 - +0.2
4,433,249 - +0.5
4,433,249 - +0.3
4,433,249 - -1.2
4,433,301 + -0.4
4,433,301 + +1.3
4,433,365 + -2.2
4,433,365 + +1.6
4,433,365 + -0.6
4,433,365 + +0.6
4,433,366 - -2.7

Or see this region's nucleotide sequence