Experiment: Carbon source D-Mannitol 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01675 and AO356_01680 are separated by 188 nucleotides AO356_01680 and AO356_01685 are separated by 219 nucleotides
AO356_01675: AO356_01675 - protein kinase, at 376,323 to 377,648
_01675
AO356_01680: AO356_01680 - transcriptional regulator, at 377,837 to 378,541
_01680
AO356_01685: AO356_01685 - type IV secretion protein Rhs, at 378,761 to 380,167
_01685
Position (kb) 377
378
379 Strain fitness (log2 ratio) -1
0
1
2
3 at 376.861 kb on - strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.193 kb on + strand, within AO356_01675 at 377.244 kb on + strand, within AO356_01675 at 377.245 kb on - strand, within AO356_01675 at 377.363 kb on + strand, within AO356_01675 at 377.363 kb on + strand, within AO356_01675 at 377.364 kb on - strand, within AO356_01675 at 377.364 kb on - strand, within AO356_01675 at 377.646 kb on + strand at 377.646 kb on + strand at 377.647 kb on - strand at 377.664 kb on + strand at 377.665 kb on - strand at 377.665 kb on - strand at 377.665 kb on - strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.680 kb on + strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.681 kb on - strand at 377.698 kb on + strand at 377.699 kb on - strand at 377.699 kb on - strand at 377.699 kb on - strand at 377.699 kb on - strand at 377.809 kb on + strand at 377.809 kb on + strand at 377.810 kb on - strand at 377.810 kb on - strand at 377.832 kb on - strand at 377.838 kb on + strand at 377.839 kb on - strand at 378.229 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.294 kb on + strand, within AO356_01680 at 378.295 kb on - strand, within AO356_01680 at 378.295 kb on - strand, within AO356_01680 at 378.309 kb on + strand, within AO356_01680 at 378.310 kb on - strand, within AO356_01680 at 378.521 kb on - strand at 378.543 kb on - strand at 378.543 kb on - strand at 378.601 kb on + strand at 378.601 kb on + strand at 378.601 kb on + strand at 378.602 kb on - strand at 378.602 kb on - strand at 378.671 kb on - strand at 378.750 kb on + strand at 378.751 kb on - strand at 378.751 kb on - strand at 378.904 kb on - strand, within AO356_01685 at 379.040 kb on + strand, within AO356_01685 at 379.149 kb on - strand, within AO356_01685 at 379.175 kb on + strand, within AO356_01685 at 379.260 kb on - strand, within AO356_01685 at 379.388 kb on + strand, within AO356_01685 at 379.388 kb on + strand, within AO356_01685 at 379.389 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685 at 379.411 kb on - strand, within AO356_01685
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM remove 376,861 - AO356_01675 0.41 +0.6 377,037 + AO356_01675 0.54 +0.8 377,037 + AO356_01675 0.54 -0.4 377,038 - AO356_01675 0.54 +0.2 377,038 - AO356_01675 0.54 -0.9 377,038 - AO356_01675 0.54 +1.5 377,038 - AO356_01675 0.54 +0.5 377,038 - AO356_01675 0.54 +0.4 377,038 - AO356_01675 0.54 -1.5 377,038 - AO356_01675 0.54 +0.8 377,193 + AO356_01675 0.66 -0.2 377,244 + AO356_01675 0.69 -1.2 377,245 - AO356_01675 0.70 +0.0 377,363 + AO356_01675 0.78 -0.9 377,363 + AO356_01675 0.78 -0.2 377,364 - AO356_01675 0.79 +0.2 377,364 - AO356_01675 0.79 +0.4 377,646 + +0.5 377,646 + +3.0 377,647 - +0.7 377,664 + -0.3 377,665 - +0.9 377,665 - +1.0 377,665 - -0.1 377,680 + +1.4 377,680 + -0.6 377,680 + +0.6 377,680 + -0.6 377,680 + +0.1 377,680 + -0.2 377,680 + +0.4 377,680 + -0.6 377,680 + -0.8 377,680 + +0.4 377,681 - -0.8 377,681 - -0.1 377,681 - +1.0 377,681 - +0.8 377,681 - -1.1 377,681 - +0.1 377,681 - -0.4 377,681 - -0.3 377,698 + +0.3 377,699 - +1.0 377,699 - -1.3 377,699 - +1.0 377,699 - +1.3 377,809 + -0.0 377,809 + +0.0 377,810 - -0.5 377,810 - +0.8 377,832 - -1.4 377,838 + +0.3 377,839 - -0.7 378,229 + AO356_01680 0.56 -0.0 378,294 + AO356_01680 0.65 +0.7 378,294 + AO356_01680 0.65 -0.3 378,294 + AO356_01680 0.65 +0.8 378,294 + AO356_01680 0.65 -0.6 378,294 + AO356_01680 0.65 +1.1 378,294 + AO356_01680 0.65 -0.3 378,295 - AO356_01680 0.65 -0.7 378,295 - AO356_01680 0.65 +1.8 378,309 + AO356_01680 0.67 +0.0 378,310 - AO356_01680 0.67 -0.8 378,521 - +0.5 378,543 - -1.4 378,543 - -1.4 378,601 + +0.3 378,601 + -0.3 378,601 + +1.4 378,602 - -1.0 378,602 - -0.4 378,671 - +0.8 378,750 + +0.1 378,751 - +0.0 378,751 - +0.5 378,904 - AO356_01685 0.10 +0.0 379,040 + AO356_01685 0.20 -0.3 379,149 - AO356_01685 0.28 +0.5 379,175 + AO356_01685 0.29 -1.4 379,260 - AO356_01685 0.35 +0.3 379,388 + AO356_01685 0.45 +0.3 379,388 + AO356_01685 0.45 +1.4 379,389 - AO356_01685 0.45 -0.1 379,411 - AO356_01685 0.46 -1.0 379,411 - AO356_01685 0.46 -0.4 379,411 - AO356_01685 0.46 +1.0
Or see this region's nucleotide sequence